Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF893 and GFF894 overlap by 4 nucleotides GFF894 and GFF895 are separated by 226 nucleotides GFF895 and GFF896 are separated by 73 nucleotides GFF896 and GFF897 are separated by 37 nucleotides
GFF893 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 963,114 to 964,334
GFF893
GFF894 - 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA, at 964,331 to 965,050
GFF894
GFF895 - hypothetical protein, at 965,277 to 965,846
GFF895
GFF896 - hypothetical protein, at 965,920 to 966,411
GFF896
GFF897 - Urease accessory protein UreG, at 966,449 to 967,072
GFF897
Position (kb) 965
966 Strain fitness (log2 ratio) -2
-1
0
1 at 964.357 kb on - strand at 964.884 kb on + strand, within GFF894 at 964.884 kb on + strand, within GFF894 at 964.885 kb on - strand, within GFF894 at 964.885 kb on - strand, within GFF894 at 964.885 kb on - strand, within GFF894 at 964.885 kb on - strand, within GFF894 at 964.885 kb on - strand, within GFF894 at 964.885 kb on - strand, within GFF894 at 965.160 kb on - strand at 965.160 kb on - strand at 965.292 kb on + strand at 965.293 kb on - strand at 965.293 kb on - strand at 965.442 kb on - strand, within GFF895 at 965.442 kb on - strand, within GFF895 at 965.458 kb on - strand, within GFF895 at 965.458 kb on - strand, within GFF895 at 965.458 kb on - strand, within GFF895 at 965.760 kb on + strand, within GFF895 at 965.761 kb on - strand, within GFF895 at 965.761 kb on - strand, within GFF895 at 965.777 kb on + strand, within GFF895 at 965.777 kb on + strand, within GFF895 at 965.777 kb on + strand, within GFF895 at 965.778 kb on - strand, within GFF895 at 965.851 kb on - strand at 966.058 kb on + strand, within GFF896 at 966.058 kb on + strand, within GFF896 at 966.058 kb on + strand, within GFF896 at 966.059 kb on - strand, within GFF896 at 966.059 kb on - strand, within GFF896 at 966.059 kb on - strand, within GFF896 at 966.059 kb on - strand, within GFF896 at 966.421 kb on - strand at 966.421 kb on - strand at 966.421 kb on - strand at 966.537 kb on + strand, within GFF897 at 966.537 kb on + strand, within GFF897 at 966.538 kb on - strand, within GFF897 at 966.538 kb on - strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.703 kb on - strand, within GFF897
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 964,357 - -0.0 964,884 + GFF894 0.77 -0.9 964,884 + GFF894 0.77 -1.4 964,885 - GFF894 0.77 +0.2 964,885 - GFF894 0.77 +0.1 964,885 - GFF894 0.77 -0.1 964,885 - GFF894 0.77 +1.0 964,885 - GFF894 0.77 -0.3 964,885 - GFF894 0.77 -1.1 965,160 - +0.9 965,160 - -1.0 965,292 + +0.3 965,293 - -1.0 965,293 - -0.1 965,442 - GFF895 0.29 -0.6 965,442 - GFF895 0.29 -0.9 965,458 - GFF895 0.32 -2.6 965,458 - GFF895 0.32 +0.7 965,458 - GFF895 0.32 -0.2 965,760 + GFF895 0.85 +0.2 965,761 - GFF895 0.85 -1.0 965,761 - GFF895 0.85 +0.9 965,777 + GFF895 0.88 -0.6 965,777 + GFF895 0.88 -1.3 965,777 + GFF895 0.88 +0.8 965,778 - GFF895 0.88 +0.1 965,851 - +0.6 966,058 + GFF896 0.28 +1.0 966,058 + GFF896 0.28 +0.7 966,058 + GFF896 0.28 -0.4 966,059 - GFF896 0.28 +0.8 966,059 - GFF896 0.28 -1.4 966,059 - GFF896 0.28 -0.5 966,059 - GFF896 0.28 -0.7 966,421 - -0.6 966,421 - -0.3 966,421 - -1.3 966,537 + GFF897 0.14 -0.6 966,537 + GFF897 0.14 -2.1 966,538 - GFF897 0.14 -0.2 966,538 - GFF897 0.14 +0.2 966,702 + GFF897 0.41 +0.5 966,702 + GFF897 0.41 +0.1 966,702 + GFF897 0.41 -0.3 966,702 + GFF897 0.41 +0.8 966,702 + GFF897 0.41 -0.6 966,703 - GFF897 0.41 -0.1
Or see this region's nucleotide sequence