Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF889 and GFF890 are separated by 66 nucleotides GFF890 and GFF891 are separated by 331 nucleotides GFF891 and GFF892 are separated by 110 nucleotides GFF892 and GFF893 are separated by 86 nucleotides
GFF889 - NAD-dependent protein deacetylase, at 959,710 to 960,480
GFF889
GFF890 - Lactoylglutathione lyase, at 960,547 to 960,969
GFF890
GFF891 - hypothetical protein, at 961,301 to 962,143
GFF891
GFF892 - queuosine precursor transporter, at 962,254 to 963,027
GFF892
GFF893 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 963,114 to 964,334
GFF893
Position (kb) 961
962
963 Strain fitness (log2 ratio) -2
-1
0
1 at 960.473 kb on + strand at 960.473 kb on + strand at 960.473 kb on + strand at 960.473 kb on + strand at 960.474 kb on - strand at 960.474 kb on - strand at 960.474 kb on - strand at 960.480 kb on + strand at 960.480 kb on + strand at 960.480 kb on + strand at 960.480 kb on + strand at 960.480 kb on + strand at 960.480 kb on + strand at 960.481 kb on - strand at 960.481 kb on - strand at 960.481 kb on - strand at 960.481 kb on - strand at 960.481 kb on - strand at 960.492 kb on + strand at 960.492 kb on + strand at 960.493 kb on - strand at 960.493 kb on - strand at 960.530 kb on + strand at 960.530 kb on + strand at 960.530 kb on + strand at 960.530 kb on + strand at 960.531 kb on - strand at 960.604 kb on + strand, within GFF890 at 960.604 kb on + strand, within GFF890 at 960.605 kb on - strand, within GFF890 at 960.662 kb on - strand, within GFF890 at 960.721 kb on + strand, within GFF890 at 960.722 kb on - strand, within GFF890 at 960.722 kb on - strand, within GFF890 at 960.793 kb on + strand, within GFF890 at 960.794 kb on - strand, within GFF890 at 960.794 kb on - strand, within GFF890 at 960.856 kb on + strand, within GFF890 at 960.856 kb on + strand, within GFF890 at 960.857 kb on - strand, within GFF890 at 961.099 kb on + strand at 961.140 kb on + strand at 961.140 kb on + strand at 961.140 kb on + strand at 961.346 kb on + strand at 961.347 kb on - strand at 961.367 kb on - strand at 961.399 kb on + strand, within GFF891 at 961.400 kb on - strand, within GFF891 at 961.430 kb on + strand, within GFF891 at 961.430 kb on + strand, within GFF891 at 961.430 kb on + strand, within GFF891 at 961.431 kb on - strand, within GFF891 at 961.436 kb on + strand, within GFF891 at 961.437 kb on - strand, within GFF891 at 961.437 kb on - strand, within GFF891 at 961.440 kb on + strand, within GFF891 at 961.441 kb on - strand, within GFF891 at 961.441 kb on - strand, within GFF891 at 961.485 kb on + strand, within GFF891 at 961.485 kb on + strand, within GFF891 at 961.485 kb on + strand, within GFF891 at 961.486 kb on - strand, within GFF891 at 961.486 kb on - strand, within GFF891 at 961.487 kb on + strand, within GFF891 at 961.583 kb on - strand, within GFF891 at 961.583 kb on - strand, within GFF891 at 961.583 kb on - strand, within GFF891 at 961.651 kb on + strand, within GFF891 at 961.652 kb on - strand, within GFF891 at 961.652 kb on - strand, within GFF891 at 961.659 kb on + strand, within GFF891 at 961.659 kb on + strand, within GFF891 at 961.659 kb on + strand, within GFF891 at 961.807 kb on + strand, within GFF891 at 961.808 kb on - strand, within GFF891 at 961.808 kb on - strand, within GFF891 at 961.808 kb on - strand, within GFF891 at 961.808 kb on - strand, within GFF891 at 961.833 kb on - strand, within GFF891 at 961.855 kb on - strand, within GFF891 at 961.872 kb on - strand, within GFF891 at 961.872 kb on - strand, within GFF891 at 961.965 kb on + strand, within GFF891 at 961.965 kb on + strand, within GFF891 at 961.965 kb on + strand, within GFF891 at 962.055 kb on + strand, within GFF891 at 962.055 kb on + strand, within GFF891 at 962.073 kb on + strand at 962.074 kb on - strand at 962.074 kb on - strand at 962.102 kb on + strand at 962.103 kb on - strand at 962.104 kb on + strand at 962.105 kb on - strand at 962.105 kb on - strand at 962.106 kb on + strand at 962.143 kb on + strand at 962.143 kb on + strand at 962.144 kb on - strand at 962.178 kb on - strand at 962.178 kb on - strand at 962.185 kb on + strand at 962.185 kb on + strand at 962.186 kb on - strand at 962.186 kb on - strand at 962.186 kb on - strand at 962.203 kb on + strand at 962.204 kb on - strand at 962.204 kb on - strand at 962.204 kb on - strand at 962.206 kb on + strand at 962.229 kb on + strand at 962.297 kb on + strand at 962.297 kb on + strand at 962.297 kb on + strand at 962.298 kb on - strand at 962.298 kb on - strand at 962.342 kb on + strand, within GFF892 at 962.343 kb on - strand, within GFF892 at 962.343 kb on - strand, within GFF892 at 962.388 kb on - strand, within GFF892 at 962.388 kb on - strand, within GFF892 at 962.388 kb on - strand, within GFF892 at 962.702 kb on + strand, within GFF892 at 962.703 kb on - strand, within GFF892 at 962.703 kb on - strand, within GFF892 at 962.751 kb on - strand, within GFF892 at 962.751 kb on - strand, within GFF892 at 962.756 kb on + strand, within GFF892 at 962.756 kb on + strand, within GFF892 at 962.756 kb on + strand, within GFF892 at 962.757 kb on - strand, within GFF892 at 962.757 kb on - strand, within GFF892 at 962.786 kb on + strand, within GFF892 at 962.786 kb on + strand, within GFF892 at 962.787 kb on - strand, within GFF892 at 962.787 kb on - strand, within GFF892 at 962.787 kb on - strand, within GFF892 at 962.918 kb on + strand, within GFF892 at 962.919 kb on - strand, within GFF892 at 962.925 kb on - strand, within GFF892 at 962.925 kb on - strand, within GFF892 at 962.928 kb on - strand, within GFF892
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 960,473 + -0.3 960,473 + +1.0 960,473 + +0.4 960,473 + +0.3 960,474 - +1.0 960,474 - +1.6 960,474 - +0.3 960,480 + +0.5 960,480 + -0.3 960,480 + -0.8 960,480 + -0.7 960,480 + +0.5 960,480 + +0.6 960,481 - +0.5 960,481 - +1.1 960,481 - -0.2 960,481 - +1.1 960,481 - +0.0 960,492 + -0.5 960,492 + +0.0 960,493 - -0.1 960,493 - -0.2 960,530 + +0.0 960,530 + -0.1 960,530 + +0.5 960,530 + +0.0 960,531 - +0.8 960,604 + GFF890 0.13 -2.0 960,604 + GFF890 0.13 +0.8 960,605 - GFF890 0.14 -1.0 960,662 - GFF890 0.27 +1.2 960,721 + GFF890 0.41 -0.8 960,722 - GFF890 0.41 +0.3 960,722 - GFF890 0.41 -0.2 960,793 + GFF890 0.58 +0.1 960,794 - GFF890 0.58 +0.6 960,794 - GFF890 0.58 +0.3 960,856 + GFF890 0.73 -1.1 960,856 + GFF890 0.73 +1.0 960,857 - GFF890 0.73 -0.4 961,099 + +0.2 961,140 + -0.5 961,140 + +1.4 961,140 + +0.5 961,346 + +0.5 961,347 - -0.1 961,367 - +0.3 961,399 + GFF891 0.12 +1.4 961,400 - GFF891 0.12 +1.0 961,430 + GFF891 0.15 -2.2 961,430 + GFF891 0.15 -0.1 961,430 + GFF891 0.15 -0.8 961,431 - GFF891 0.15 -0.0 961,436 + GFF891 0.16 +1.1 961,437 - GFF891 0.16 +0.3 961,437 - GFF891 0.16 -0.1 961,440 + GFF891 0.16 -0.1 961,441 - GFF891 0.17 +0.3 961,441 - GFF891 0.17 +1.0 961,485 + GFF891 0.22 +0.0 961,485 + GFF891 0.22 +0.7 961,485 + GFF891 0.22 +0.7 961,486 - GFF891 0.22 +0.2 961,486 - GFF891 0.22 -0.7 961,487 + GFF891 0.22 +0.3 961,583 - GFF891 0.33 +0.6 961,583 - GFF891 0.33 -0.7 961,583 - GFF891 0.33 -0.1 961,651 + GFF891 0.42 -0.3 961,652 - GFF891 0.42 +0.7 961,652 - GFF891 0.42 -0.7 961,659 + GFF891 0.42 +0.3 961,659 + GFF891 0.42 +1.0 961,659 + GFF891 0.42 -1.1 961,807 + GFF891 0.60 -0.8 961,808 - GFF891 0.60 -0.8 961,808 - GFF891 0.60 -0.3 961,808 - GFF891 0.60 +1.0 961,808 - GFF891 0.60 +0.6 961,833 - GFF891 0.63 -0.2 961,855 - GFF891 0.66 -0.5 961,872 - GFF891 0.68 +0.1 961,872 - GFF891 0.68 +0.8 961,965 + GFF891 0.79 +0.8 961,965 + GFF891 0.79 +1.5 961,965 + GFF891 0.79 +0.3 962,055 + GFF891 0.89 +0.7 962,055 + GFF891 0.89 +0.6 962,073 + -0.7 962,074 - -0.9 962,074 - -0.1 962,102 + -0.5 962,103 - +0.9 962,104 + +0.5 962,105 - +0.0 962,105 - +1.3 962,106 + -0.3 962,143 + -0.3 962,143 + +1.0 962,144 - -0.2 962,178 - +0.3 962,178 - +1.0 962,185 + -0.9 962,185 + -0.3 962,186 - -0.4 962,186 - -0.1 962,186 - -0.8 962,203 + -0.0 962,204 - +1.0 962,204 - -0.5 962,204 - -1.0 962,206 + +0.1 962,229 + -0.6 962,297 + +0.1 962,297 + -0.5 962,297 + +0.6 962,298 - +0.3 962,298 - +0.2 962,342 + GFF892 0.11 +0.4 962,343 - GFF892 0.11 -0.8 962,343 - GFF892 0.11 +0.0 962,388 - GFF892 0.17 -0.6 962,388 - GFF892 0.17 -0.3 962,388 - GFF892 0.17 +0.4 962,702 + GFF892 0.58 -0.2 962,703 - GFF892 0.58 +0.2 962,703 - GFF892 0.58 +1.3 962,751 - GFF892 0.64 -0.2 962,751 - GFF892 0.64 -0.4 962,756 + GFF892 0.65 -0.7 962,756 + GFF892 0.65 -0.2 962,756 + GFF892 0.65 -0.3 962,757 - GFF892 0.65 -0.6 962,757 - GFF892 0.65 +0.5 962,786 + GFF892 0.69 +0.2 962,786 + GFF892 0.69 -0.7 962,787 - GFF892 0.69 +0.0 962,787 - GFF892 0.69 -1.3 962,787 - GFF892 0.69 +0.0 962,918 + GFF892 0.86 +1.5 962,919 - GFF892 0.86 +0.6 962,925 - GFF892 0.87 +1.5 962,925 - GFF892 0.87 -0.2 962,928 - GFF892 0.87 -0.3
Or see this region's nucleotide sequence