Strain Fitness in Xanthobacter sp. DMC5 around GFF850

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF849 and GFF850 overlap by 4 nucleotidesGFF850 and GFF851 are separated by 169 nucleotides GFF849 - Sensory histidine kinase/phosphatase NtrB, at 915,424 to 916,680 GFF849 GFF850 - tRNA-dihydrouridine synthase B, at 916,677 to 917,696 GFF850 GFF851 - Bifunctional enzyme IspD/IspF, at 917,866 to 919,065 GFF851 Position (kb) 916 917 918Strain fitness (log2 ratio) -3 -2 -1 0 1at 916.708 kb on + strandat 916.897 kb on + strand, within GFF850at 917.393 kb on + strand, within GFF850at 917.394 kb on - strand, within GFF850at 917.394 kb on - strand, within GFF850at 917.394 kb on - strand, within GFF850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
916,708 + -0.9
916,897 + GFF850 0.22 -0.2
917,393 + GFF850 0.70 +0.1
917,394 - GFF850 0.70 -0.5
917,394 - GFF850 0.70 -1.5
917,394 - GFF850 0.70 -2.9

Or see this region's nucleotide sequence