Strain Fitness in Xanthobacter sp. DMC5 around GFF819

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF818 and GFF819 are separated by 15 nucleotidesGFF819 and GFF820 are separated by 152 nucleotides GFF818 - hypothetical protein, at 875,341 to 885,402 GFF818 GFF819 - hypothetical protein, at 885,418 to 885,867 GFF819 GFF820 - hypothetical protein, at 886,020 to 886,511 GFF820 Position (kb) 885 886Strain fitness (log2 ratio) -2 -1 0 1 2at 884.602 kb on + strandat 884.602 kb on + strandat 884.603 kb on - strandat 884.603 kb on - strandat 884.603 kb on - strandat 884.644 kb on + strandat 884.645 kb on - strandat 884.725 kb on + strandat 884.920 kb on + strandat 884.920 kb on + strandat 884.920 kb on + strandat 884.921 kb on - strandat 884.950 kb on + strandat 884.951 kb on - strandat 884.951 kb on - strandat 884.971 kb on + strandat 884.974 kb on + strandat 884.974 kb on + strandat 884.974 kb on + strandat 884.974 kb on + strandat 884.975 kb on - strandat 884.975 kb on - strandat 884.975 kb on - strandat 885.154 kb on + strandat 885.154 kb on + strandat 885.154 kb on + strandat 885.154 kb on + strandat 885.155 kb on - strandat 885.155 kb on - strandat 885.155 kb on - strandat 885.334 kb on + strandat 885.334 kb on + strandat 885.335 kb on - strandat 885.335 kb on - strandat 885.342 kb on + strandat 885.343 kb on - strandat 885.343 kb on - strandat 885.441 kb on - strandat 885.535 kb on + strand, within GFF819at 885.536 kb on - strand, within GFF819at 886.016 kb on + strandat 886.665 kb on + strandat 886.665 kb on + strandat 886.802 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
884,602 + -0.1
884,602 + +0.8
884,603 - -0.5
884,603 - -0.8
884,603 - +0.6
884,644 + -0.3
884,645 - +0.2
884,725 + +0.1
884,920 + -0.3
884,920 + -0.0
884,920 + -0.7
884,921 - -0.6
884,950 + -2.5
884,951 - -0.6
884,951 - +0.5
884,971 + -0.1
884,974 + +2.3
884,974 + -0.3
884,974 + +0.2
884,974 + -0.2
884,975 - +1.3
884,975 - -0.3
884,975 - +0.4
885,154 + +1.1
885,154 + -0.2
885,154 + -0.7
885,154 + -1.3
885,155 - -1.4
885,155 - +0.6
885,155 - -0.0
885,334 + -1.6
885,334 + -0.2
885,335 - -0.2
885,335 - +1.8
885,342 + -0.1
885,343 - -0.2
885,343 - -0.3
885,441 - +1.1
885,535 + GFF819 0.26 +0.7
885,536 - GFF819 0.26 +0.7
886,016 + +0.8
886,665 + +0.4
886,665 + +0.9
886,802 + -0.2

Or see this region's nucleotide sequence