Strain Fitness in Xanthobacter sp. DMC5 around GFF803

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF802 and GFF803 are separated by 1 nucleotidesGFF803 and GFF804 are separated by 62 nucleotides GFF801 - Glutathione transport system permease protein GsiD, at 854,660 to 855,577 GFF801 GFF802 - Glutathione transport system permease protein GsiC, at 855,574 to 856,575 GFF802 GFF803 - Periplasmic dipeptide transport protein, at 856,577 to 858,190 GFF803 GFF804 - putative FMNH2-dependent monooxygenase SfnC, at 858,253 to 859,494 GFF804 Position (kb) 856 857 858 859Strain fitness (log2 ratio) -2 -1 0 1 2at 855.608 kb on + strandat 855.746 kb on + strand, within GFF802at 855.932 kb on + strand, within GFF802at 855.933 kb on - strand, within GFF802at 855.944 kb on + strand, within GFF802at 855.945 kb on - strand, within GFF802at 855.973 kb on + strand, within GFF802at 855.973 kb on + strand, within GFF802at 855.974 kb on - strand, within GFF802at 856.015 kb on - strand, within GFF802at 856.264 kb on + strand, within GFF802at 856.264 kb on + strand, within GFF802at 856.264 kb on + strand, within GFF802at 856.264 kb on + strand, within GFF802at 856.265 kb on - strand, within GFF802at 856.265 kb on - strand, within GFF802at 856.265 kb on - strand, within GFF802at 856.335 kb on - strand, within GFF802at 856.335 kb on - strand, within GFF802at 856.397 kb on + strand, within GFF802at 856.397 kb on + strand, within GFF802at 856.397 kb on + strand, within GFF802at 856.398 kb on - strand, within GFF802at 856.532 kb on + strandat 856.533 kb on - strandat 856.665 kb on + strandat 856.665 kb on + strandat 856.665 kb on + strandat 856.666 kb on - strandat 856.899 kb on + strand, within GFF803at 856.900 kb on - strand, within GFF803at 856.950 kb on + strand, within GFF803at 856.950 kb on + strand, within GFF803at 856.951 kb on - strand, within GFF803at 856.951 kb on - strand, within GFF803at 856.951 kb on - strand, within GFF803at 856.965 kb on + strand, within GFF803at 856.966 kb on - strand, within GFF803at 857.016 kb on + strand, within GFF803at 857.035 kb on - strand, within GFF803at 857.079 kb on - strand, within GFF803at 857.143 kb on - strand, within GFF803at 857.143 kb on - strand, within GFF803at 857.148 kb on + strand, within GFF803at 857.149 kb on - strand, within GFF803at 857.149 kb on - strand, within GFF803at 857.149 kb on - strand, within GFF803at 857.160 kb on + strand, within GFF803at 857.184 kb on + strand, within GFF803at 857.223 kb on + strand, within GFF803at 857.223 kb on + strand, within GFF803at 857.224 kb on - strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.329 kb on - strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.431 kb on - strand, within GFF803at 857.431 kb on - strand, within GFF803at 857.431 kb on - strand, within GFF803at 857.431 kb on - strand, within GFF803at 857.508 kb on + strand, within GFF803at 857.530 kb on - strand, within GFF803at 857.530 kb on - strand, within GFF803at 857.530 kb on - strand, within GFF803at 857.530 kb on - strand, within GFF803at 857.736 kb on + strand, within GFF803at 857.737 kb on - strand, within GFF803at 857.737 kb on - strand, within GFF803at 857.823 kb on + strand, within GFF803at 857.823 kb on + strand, within GFF803at 857.824 kb on - strand, within GFF803at 857.824 kb on - strand, within GFF803at 857.961 kb on + strand, within GFF803at 857.961 kb on + strand, within GFF803at 857.961 kb on + strand, within GFF803at 857.961 kb on + strand, within GFF803at 858.320 kb on + strandat 858.320 kb on + strandat 858.320 kb on + strandat 858.320 kb on + strandat 858.320 kb on + strandat 858.321 kb on - strandat 858.593 kb on + strand, within GFF804at 858.593 kb on + strand, within GFF804at 858.594 kb on - strand, within GFF804at 858.594 kb on - strand, within GFF804at 858.671 kb on + strand, within GFF804at 858.671 kb on + strand, within GFF804at 858.671 kb on + strand, within GFF804at 858.753 kb on - strand, within GFF804at 858.777 kb on - strand, within GFF804at 858.845 kb on + strand, within GFF804at 859.007 kb on + strand, within GFF804at 859.007 kb on + strand, within GFF804at 859.007 kb on + strand, within GFF804at 859.007 kb on + strand, within GFF804at 859.008 kb on - strand, within GFF804at 859.010 kb on + strand, within GFF804at 859.011 kb on - strand, within GFF804at 859.011 kb on - strand, within GFF804at 859.011 kb on - strand, within GFF804at 859.102 kb on - strand, within GFF804at 859.181 kb on + strand, within GFF804at 859.181 kb on + strand, within GFF804

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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855,608 + -0.4
855,746 + GFF802 0.17 +0.1
855,932 + GFF802 0.36 -0.8
855,933 - GFF802 0.36 -0.6
855,944 + GFF802 0.37 +1.5
855,945 - GFF802 0.37 -0.3
855,973 + GFF802 0.40 -0.2
855,973 + GFF802 0.40 -1.5
855,974 - GFF802 0.40 +0.7
856,015 - GFF802 0.44 -0.9
856,264 + GFF802 0.69 +0.4
856,264 + GFF802 0.69 -0.4
856,264 + GFF802 0.69 -1.9
856,264 + GFF802 0.69 +0.9
856,265 - GFF802 0.69 -0.5
856,265 - GFF802 0.69 +0.0
856,265 - GFF802 0.69 +0.2
856,335 - GFF802 0.76 +0.5
856,335 - GFF802 0.76 +1.8
856,397 + GFF802 0.82 +0.2
856,397 + GFF802 0.82 -0.9
856,397 + GFF802 0.82 -0.5
856,398 - GFF802 0.82 -0.7
856,532 + +0.3
856,533 - -1.0
856,665 + +1.6
856,665 + -0.1
856,665 + -0.1
856,666 - +0.6
856,899 + GFF803 0.20 +0.5
856,900 - GFF803 0.20 +0.1
856,950 + GFF803 0.23 +1.2
856,950 + GFF803 0.23 +0.3
856,951 - GFF803 0.23 -0.7
856,951 - GFF803 0.23 +0.3
856,951 - GFF803 0.23 +1.1
856,965 + GFF803 0.24 -0.2
856,966 - GFF803 0.24 -0.5
857,016 + GFF803 0.27 +0.3
857,035 - GFF803 0.28 -0.2
857,079 - GFF803 0.31 -0.3
857,143 - GFF803 0.35 +0.7
857,143 - GFF803 0.35 -0.2
857,148 + GFF803 0.35 +1.2
857,149 - GFF803 0.35 -0.6
857,149 - GFF803 0.35 -0.4
857,149 - GFF803 0.35 -0.8
857,160 + GFF803 0.36 +0.7
857,184 + GFF803 0.38 +0.1
857,223 + GFF803 0.40 +0.2
857,223 + GFF803 0.40 -0.6
857,224 - GFF803 0.40 +0.3
857,328 + GFF803 0.47 +0.6
857,328 + GFF803 0.47 -0.5
857,328 + GFF803 0.47 -0.4
857,328 + GFF803 0.47 +0.4
857,328 + GFF803 0.47 -0.2
857,329 - GFF803 0.47 -1.3
857,430 + GFF803 0.53 -0.6
857,430 + GFF803 0.53 -0.8
857,430 + GFF803 0.53 +1.4
857,430 + GFF803 0.53 +0.1
857,430 + GFF803 0.53 -1.5
857,430 + GFF803 0.53 +0.6
857,431 - GFF803 0.53 +0.9
857,431 - GFF803 0.53 -0.6
857,431 - GFF803 0.53 +0.0
857,431 - GFF803 0.53 -0.4
857,508 + GFF803 0.58 +0.9
857,530 - GFF803 0.59 +0.3
857,530 - GFF803 0.59 +0.1
857,530 - GFF803 0.59 +0.1
857,530 - GFF803 0.59 +1.0
857,736 + GFF803 0.72 +0.3
857,737 - GFF803 0.72 -2.0
857,737 - GFF803 0.72 -0.4
857,823 + GFF803 0.77 -0.4
857,823 + GFF803 0.77 -0.3
857,824 - GFF803 0.77 +0.4
857,824 - GFF803 0.77 -0.6
857,961 + GFF803 0.86 -0.5
857,961 + GFF803 0.86 +0.3
857,961 + GFF803 0.86 -0.2
857,961 + GFF803 0.86 +0.5
858,320 + -1.4
858,320 + -0.4
858,320 + +0.2
858,320 + -1.1
858,320 + +0.6
858,321 - -2.5
858,593 + GFF804 0.27 -0.3
858,593 + GFF804 0.27 +0.1
858,594 - GFF804 0.27 -0.2
858,594 - GFF804 0.27 +2.1
858,671 + GFF804 0.34 -1.1
858,671 + GFF804 0.34 +0.1
858,671 + GFF804 0.34 +0.4
858,753 - GFF804 0.40 -0.8
858,777 - GFF804 0.42 -0.4
858,845 + GFF804 0.48 -0.5
859,007 + GFF804 0.61 +1.0
859,007 + GFF804 0.61 +0.0
859,007 + GFF804 0.61 +1.2
859,007 + GFF804 0.61 -0.1
859,008 - GFF804 0.61 +0.7
859,010 + GFF804 0.61 -0.7
859,011 - GFF804 0.61 -0.3
859,011 - GFF804 0.61 -0.9
859,011 - GFF804 0.61 +1.1
859,102 - GFF804 0.68 -0.2
859,181 + GFF804 0.75 +1.0
859,181 + GFF804 0.75 -0.7

Or see this region's nucleotide sequence