Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF751 and GFF752 are separated by 38 nucleotides GFF752 and GFF753 are separated by 56 nucleotides
GFF751 - DNA gyrase subunit A, at 801,301 to 804,060
GFF751
GFF752 - Homoserine/homoserine lactone efflux protein, at 804,099 to 804,710
GFF752
GFF753 - ATP-dependent DNA helicase RecQ, at 804,767 to 806,584
GFF753
Position (kb) 804
805 Strain fitness (log2 ratio) -1
0
1
2 at 804.288 kb on + strand, within GFF752 at 804.289 kb on - strand, within GFF752 at 804.289 kb on - strand, within GFF752 at 804.289 kb on - strand, within GFF752 at 804.289 kb on - strand, within GFF752 at 804.331 kb on - strand, within GFF752 at 804.345 kb on + strand, within GFF752 at 804.346 kb on - strand, within GFF752 at 804.757 kb on - strand at 804.757 kb on - strand at 804.927 kb on - strand at 805.115 kb on + strand, within GFF753 at 805.115 kb on + strand, within GFF753 at 805.116 kb on - strand, within GFF753 at 805.116 kb on - strand, within GFF753 at 805.271 kb on + strand, within GFF753 at 805.481 kb on + strand, within GFF753 at 805.481 kb on + strand, within GFF753 at 805.481 kb on + strand, within GFF753 at 805.481 kb on + strand, within GFF753 at 805.481 kb on + strand, within GFF753 at 805.481 kb on + strand, within GFF753 at 805.481 kb on + strand, within GFF753 at 805.482 kb on - strand, within GFF753 at 805.482 kb on - strand, within GFF753 at 805.554 kb on - strand, within GFF753 at 805.554 kb on - strand, within GFF753
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 804,288 + GFF752 0.31 +0.9 804,289 - GFF752 0.31 +0.2 804,289 - GFF752 0.31 -0.7 804,289 - GFF752 0.31 -0.8 804,289 - GFF752 0.31 +0.1 804,331 - GFF752 0.38 +0.7 804,345 + GFF752 0.40 +0.4 804,346 - GFF752 0.40 -0.3 804,757 - +0.9 804,757 - +0.1 804,927 - -1.1 805,115 + GFF753 0.19 +1.8 805,115 + GFF753 0.19 -0.5 805,116 - GFF753 0.19 +2.1 805,116 - GFF753 0.19 +1.4 805,271 + GFF753 0.28 +0.8 805,481 + GFF753 0.39 -0.2 805,481 + GFF753 0.39 -0.3 805,481 + GFF753 0.39 +1.6 805,481 + GFF753 0.39 +0.7 805,481 + GFF753 0.39 -0.9 805,481 + GFF753 0.39 -0.5 805,481 + GFF753 0.39 +0.3 805,482 - GFF753 0.39 +0.2 805,482 - GFF753 0.39 -0.2 805,554 - GFF753 0.43 +0.5 805,554 - GFF753 0.43 +0.5
Or see this region's nucleotide sequence