Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF727 and GFF728 are separated by 1 nucleotides GFF728 and GFF729 overlap by 19 nucleotides GFF729 and GFF730 are separated by 67 nucleotides
GFF727 - Lipoyl synthase, at 774,140 to 775,093
GFF727
GFF728 - Ribosome association toxin RatA, at 775,095 to 775,553
GFF728
GFF729 - hypothetical protein, at 775,535 to 775,948
GFF729
GFF730 - Leu/Ile/Val-binding protein, at 776,016 to 777,116
GFF730
Position (kb) 775
776 Strain fitness (log2 ratio) -2
-1
0
1
2 at 775.536 kb on + strand at 775.537 kb on - strand at 775.729 kb on - strand, within GFF729 at 776.017 kb on + strand at 776.018 kb on - strand at 776.050 kb on + strand at 776.051 kb on - strand at 776.051 kb on - strand at 776.051 kb on - strand at 776.218 kb on + strand, within GFF730 at 776.227 kb on + strand, within GFF730 at 776.227 kb on + strand, within GFF730 at 776.458 kb on + strand, within GFF730 at 776.536 kb on + strand, within GFF730 at 776.536 kb on + strand, within GFF730 at 776.536 kb on + strand, within GFF730 at 776.536 kb on + strand, within GFF730 at 776.537 kb on - strand, within GFF730 at 776.537 kb on - strand, within GFF730 at 776.537 kb on - strand, within GFF730 at 776.733 kb on - strand, within GFF730
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 775,536 + -0.2 775,537 - +0.2 775,729 - GFF729 0.47 -0.7 776,017 + +0.2 776,018 - -1.8 776,050 + -2.6 776,051 - +0.2 776,051 - -1.6 776,051 - +0.7 776,218 + GFF730 0.18 +0.5 776,227 + GFF730 0.19 +1.1 776,227 + GFF730 0.19 +0.7 776,458 + GFF730 0.40 -0.4 776,536 + GFF730 0.47 +2.4 776,536 + GFF730 0.47 -0.1 776,536 + GFF730 0.47 +0.8 776,536 + GFF730 0.47 -0.9 776,537 - GFF730 0.47 -0.4 776,537 - GFF730 0.47 +0.9 776,537 - GFF730 0.47 +0.1 776,733 - GFF730 0.65 -2.4
Or see this region's nucleotide sequence