Strain Fitness in Xanthobacter sp. DMC5 around GFF721

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF720 and GFF721 overlap by 4 nucleotidesGFF721 and GFF722 are separated by 31 nucleotides GFF720 - 1-deoxy-D-xylulose-5-phosphate synthase, at 767,609 to 769,000 GFF720 GFF721 - hypothetical protein, at 768,997 to 769,704 GFF721 GFF722 - Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, at 769,736 to 771,103 GFF722 Position (kb) 768 769 770Strain fitness (log2 ratio) -1 0 1at 768.263 kb on - strand, within GFF720at 768.326 kb on + strand, within GFF720at 768.417 kb on - strand, within GFF720at 768.549 kb on - strand, within GFF720at 768.665 kb on + strand, within GFF720at 768.666 kb on - strand, within GFF720at 768.992 kb on + strandat 769.039 kb on + strandat 769.039 kb on + strandat 769.039 kb on + strandat 769.040 kb on - strandat 769.243 kb on + strand, within GFF721at 769.392 kb on + strand, within GFF721at 769.429 kb on + strand, within GFF721at 769.430 kb on - strand, within GFF721at 769.587 kb on + strand, within GFF721at 769.639 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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768,263 - GFF720 0.47 +0.5
768,326 + GFF720 0.52 -1.1
768,417 - GFF720 0.58 +0.1
768,549 - GFF720 0.68 -1.5
768,665 + GFF720 0.76 -0.2
768,666 - GFF720 0.76 -0.7
768,992 + +0.6
769,039 + +1.1
769,039 + -0.6
769,039 + -0.1
769,040 - +0.1
769,243 + GFF721 0.35 -0.9
769,392 + GFF721 0.56 -0.5
769,429 + GFF721 0.61 +1.6
769,430 - GFF721 0.61 -0.7
769,587 + GFF721 0.83 -0.1
769,639 + +0.1

Or see this region's nucleotide sequence