Strain Fitness in Xanthobacter sp. DMC5 around GFF714

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF713 and GFF714 are separated by 15 nucleotidesGFF714 and GFF715 are separated by 3 nucleotides GFF713 - hypothetical protein, at 758,825 to 760,312 GFF713 GFF714 - Voltage-gated ClC-type chloride channel ClcB, at 760,328 to 762,124 GFF714 GFF715 - DNA topoisomerase 4 subunit A, at 762,128 to 764,365 GFF715 Position (kb) 760 761 762 763Strain fitness (log2 ratio) -1 0 1at 759.334 kb on + strand, within GFF713at 759.335 kb on - strand, within GFF713at 759.389 kb on + strand, within GFF713at 759.390 kb on - strand, within GFF713at 759.617 kb on + strand, within GFF713at 759.618 kb on - strand, within GFF713at 759.717 kb on + strand, within GFF713at 760.147 kb on + strand, within GFF713at 760.253 kb on + strandat 760.254 kb on - strandat 760.468 kb on + strandat 760.469 kb on - strandat 760.576 kb on - strand, within GFF714at 761.211 kb on + strand, within GFF714at 761.212 kb on - strand, within GFF714at 761.212 kb on - strand, within GFF714at 761.493 kb on + strand, within GFF714at 761.662 kb on - strand, within GFF714at 761.702 kb on + strand, within GFF714at 761.702 kb on + strand, within GFF714at 761.702 kb on + strand, within GFF714at 761.703 kb on - strand, within GFF714at 761.922 kb on + strand, within GFF714at 761.923 kb on - strand, within GFF714at 761.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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759,334 + GFF713 0.34 +0.5
759,335 - GFF713 0.34 +0.0
759,389 + GFF713 0.38 +1.4
759,390 - GFF713 0.38 +0.4
759,617 + GFF713 0.53 +0.4
759,618 - GFF713 0.53 -0.7
759,717 + GFF713 0.60 +1.0
760,147 + GFF713 0.89 +0.8
760,253 + +0.7
760,254 - -0.6
760,468 + -0.3
760,469 - -0.0
760,576 - GFF714 0.14 +0.7
761,211 + GFF714 0.49 -0.2
761,212 - GFF714 0.49 +0.4
761,212 - GFF714 0.49 -0.6
761,493 + GFF714 0.65 -0.7
761,662 - GFF714 0.74 +0.6
761,702 + GFF714 0.76 -0.1
761,702 + GFF714 0.76 +0.2
761,702 + GFF714 0.76 +0.2
761,703 - GFF714 0.77 -0.3
761,922 + GFF714 0.89 +0.3
761,923 - GFF714 0.89 +1.7
761,948 - -0.1

Or see this region's nucleotide sequence