Strain Fitness in Xanthobacter sp. DMC5 around GFF675

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF673 and GFF674 overlap by 4 nucleotidesGFF674 and GFF675 are separated by 13 nucleotidesGFF675 and GFF676 are separated by 64 nucleotides GFF673 - Maltose regulon regulatory protein MalI, at 723,611 to 724,735 GFF673 GFF674 - Glutamine transport system permease protein GlnP, at 724,732 to 725,406 GFF674 GFF675 - L-cystine transport system permease protein YecS, at 725,420 to 726,073 GFF675 GFF676 - ABC transporter glutamine-binding protein GlnH, at 726,138 to 726,953 GFF676 Position (kb) 725 726 727Strain fitness (log2 ratio) -2 -1 0 1at 724.442 kb on + strand, within GFF673at 724.443 kb on - strand, within GFF673at 724.443 kb on - strand, within GFF673at 724.663 kb on - strandat 724.738 kb on + strandat 724.739 kb on - strandat 724.739 kb on - strandat 724.739 kb on - strandat 724.739 kb on - strandat 724.782 kb on - strandat 724.782 kb on - strandat 724.782 kb on - strandat 724.909 kb on + strand, within GFF674at 724.909 kb on + strand, within GFF674at 724.910 kb on - strand, within GFF674at 724.910 kb on - strand, within GFF674at 724.910 kb on - strand, within GFF674at 724.910 kb on - strand, within GFF674at 724.910 kb on - strand, within GFF674at 725.042 kb on - strand, within GFF674at 725.140 kb on + strand, within GFF674at 725.140 kb on + strand, within GFF674at 725.140 kb on + strand, within GFF674at 725.140 kb on + strand, within GFF674at 725.141 kb on - strand, within GFF674at 725.141 kb on - strand, within GFF674at 725.141 kb on - strand, within GFF674at 725.141 kb on - strand, within GFF674at 725.302 kb on + strand, within GFF674at 725.302 kb on + strand, within GFF674at 725.302 kb on + strand, within GFF674at 725.302 kb on + strand, within GFF674at 725.305 kb on - strand, within GFF674at 725.324 kb on - strand, within GFF674at 725.368 kb on + strandat 725.369 kb on - strandat 725.369 kb on - strandat 725.585 kb on + strand, within GFF675at 725.585 kb on + strand, within GFF675at 725.586 kb on - strand, within GFF675at 725.586 kb on - strand, within GFF675at 725.586 kb on - strand, within GFF675at 725.586 kb on - strand, within GFF675at 725.798 kb on + strand, within GFF675at 725.798 kb on + strand, within GFF675at 725.798 kb on + strand, within GFF675at 725.799 kb on - strand, within GFF675at 725.799 kb on - strand, within GFF675at 725.799 kb on - strand, within GFF675at 725.799 kb on - strand, within GFF675at 725.799 kb on - strand, within GFF675at 725.799 kb on - strand, within GFF675at 725.799 kb on - strand, within GFF675at 725.799 kb on - strand, within GFF675at 725.999 kb on + strand, within GFF675at 726.000 kb on - strand, within GFF675at 726.000 kb on - strand, within GFF675at 726.029 kb on + strandat 726.030 kb on - strandat 726.030 kb on - strandat 726.131 kb on + strandat 726.339 kb on + strand, within GFF676at 726.340 kb on - strand, within GFF676at 726.372 kb on + strand, within GFF676at 726.372 kb on + strand, within GFF676at 726.372 kb on + strand, within GFF676at 726.373 kb on - strand, within GFF676at 726.427 kb on - strand, within GFF676at 726.442 kb on - strand, within GFF676at 726.513 kb on + strand, within GFF676at 726.514 kb on - strand, within GFF676at 726.807 kb on + strand, within GFF676at 726.810 kb on - strand, within GFF676at 727.039 kb on + strandat 727.039 kb on + strandat 727.039 kb on + strandat 727.039 kb on + strandat 727.040 kb on - strandat 727.040 kb on - strandat 727.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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724,442 + GFF673 0.74 -1.3
724,443 - GFF673 0.74 +0.3
724,443 - GFF673 0.74 -0.0
724,663 - -1.2
724,738 + +0.1
724,739 - -0.5
724,739 - -1.1
724,739 - +0.4
724,739 - -2.3
724,782 - -0.4
724,782 - +1.3
724,782 - -0.2
724,909 + GFF674 0.26 +0.9
724,909 + GFF674 0.26 -1.0
724,910 - GFF674 0.26 +0.2
724,910 - GFF674 0.26 -0.7
724,910 - GFF674 0.26 -0.3
724,910 - GFF674 0.26 +0.5
724,910 - GFF674 0.26 +1.2
725,042 - GFF674 0.46 -0.3
725,140 + GFF674 0.60 +0.2
725,140 + GFF674 0.60 -0.4
725,140 + GFF674 0.60 -0.3
725,140 + GFF674 0.60 +1.1
725,141 - GFF674 0.61 -0.6
725,141 - GFF674 0.61 +0.0
725,141 - GFF674 0.61 +0.6
725,141 - GFF674 0.61 -0.5
725,302 + GFF674 0.84 -0.6
725,302 + GFF674 0.84 -0.0
725,302 + GFF674 0.84 -0.9
725,302 + GFF674 0.84 -0.9
725,305 - GFF674 0.85 +0.1
725,324 - GFF674 0.88 -0.1
725,368 + -1.0
725,369 - -0.1
725,369 - +0.0
725,585 + GFF675 0.25 +1.1
725,585 + GFF675 0.25 +0.1
725,586 - GFF675 0.25 +0.6
725,586 - GFF675 0.25 +0.4
725,586 - GFF675 0.25 +1.2
725,586 - GFF675 0.25 +0.5
725,798 + GFF675 0.58 +0.2
725,798 + GFF675 0.58 -0.3
725,798 + GFF675 0.58 -0.7
725,799 - GFF675 0.58 +0.1
725,799 - GFF675 0.58 +0.5
725,799 - GFF675 0.58 +0.1
725,799 - GFF675 0.58 +0.6
725,799 - GFF675 0.58 +0.2
725,799 - GFF675 0.58 +0.1
725,799 - GFF675 0.58 -0.7
725,799 - GFF675 0.58 -0.2
725,999 + GFF675 0.89 +0.2
726,000 - GFF675 0.89 -0.3
726,000 - GFF675 0.89 -0.2
726,029 + -0.5
726,030 - -0.2
726,030 - +0.2
726,131 + +0.9
726,339 + GFF676 0.25 +0.4
726,340 - GFF676 0.25 +0.9
726,372 + GFF676 0.29 -0.4
726,372 + GFF676 0.29 +0.1
726,372 + GFF676 0.29 +0.0
726,373 - GFF676 0.29 +0.2
726,427 - GFF676 0.35 +0.1
726,442 - GFF676 0.37 +0.1
726,513 + GFF676 0.46 -1.0
726,514 - GFF676 0.46 -0.2
726,807 + GFF676 0.82 +0.3
726,810 - GFF676 0.82 +0.3
727,039 + -1.1
727,039 + +0.5
727,039 + +0.5
727,039 + +1.7
727,040 - +0.4
727,040 - +0.4
727,040 - +0.6

Or see this region's nucleotide sequence