Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF655 and GFF656 overlap by 4 nucleotides GFF656 and GFF657 are separated by 305 nucleotides GFF657 and GFF658 are separated by 4 nucleotides
GFF655 - Nicotinate dehydrogenase subunit B, at 702,927 to 706,475
GFF655
GFF656 - Nicotinate dehydrogenase subunit A, at 706,472 to 706,960
GFF656
GFF657 - 6-hydroxynicotinate reductase, at 707,266 to 708,747
GFF657
GFF658 - hypothetical protein, at 708,752 to 709,753
GFF658
GFF659 - hypothetical protein, at 709,746 to 710,330
GFF659
Position (kb) 707
708
709 Strain fitness (log2 ratio) -1
0
1
2 at 706.656 kb on + strand, within GFF656 at 706.884 kb on + strand, within GFF656 at 706.885 kb on - strand, within GFF656 at 706.885 kb on - strand, within GFF656 at 707.218 kb on + strand at 707.219 kb on - strand at 707.341 kb on + strand at 707.341 kb on + strand at 707.341 kb on + strand at 707.342 kb on - strand at 707.342 kb on - strand at 707.377 kb on + strand at 707.378 kb on - strand at 707.545 kb on + strand, within GFF657 at 707.636 kb on - strand, within GFF657 at 707.636 kb on - strand, within GFF657 at 708.122 kb on - strand, within GFF657 at 708.260 kb on - strand, within GFF657 at 708.265 kb on + strand, within GFF657 at 708.268 kb on + strand, within GFF657 at 708.268 kb on + strand, within GFF657 at 708.269 kb on - strand, within GFF657 at 708.322 kb on + strand, within GFF657 at 708.323 kb on - strand, within GFF657 at 708.493 kb on + strand, within GFF657 at 708.493 kb on + strand, within GFF657 at 708.493 kb on + strand, within GFF657 at 708.494 kb on - strand, within GFF657 at 708.494 kb on - strand, within GFF657 at 708.494 kb on - strand, within GFF657 at 708.494 kb on - strand, within GFF657 at 708.494 kb on - strand, within GFF657 at 708.562 kb on + strand, within GFF657 at 708.563 kb on - strand, within GFF657 at 708.825 kb on + strand at 708.826 kb on - strand at 708.982 kb on + strand, within GFF658 at 709.156 kb on + strand, within GFF658 at 709.157 kb on - strand, within GFF658 at 709.214 kb on + strand, within GFF658 at 709.215 kb on - strand, within GFF658 at 709.380 kb on + strand, within GFF658 at 709.693 kb on + strand at 709.694 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 706,656 + GFF656 0.38 -0.7 706,884 + GFF656 0.84 -1.2 706,885 - GFF656 0.84 +1.2 706,885 - GFF656 0.84 -0.3 707,218 + +0.2 707,219 - +0.9 707,341 + +0.1 707,341 + -0.3 707,341 + +0.1 707,342 - -0.3 707,342 - +1.1 707,377 + +0.2 707,378 - +0.9 707,545 + GFF657 0.19 +1.4 707,636 - GFF657 0.25 -0.0 707,636 - GFF657 0.25 -0.5 708,122 - GFF657 0.58 +0.4 708,260 - GFF657 0.67 +1.9 708,265 + GFF657 0.67 -0.4 708,268 + GFF657 0.68 +0.6 708,268 + GFF657 0.68 -0.2 708,269 - GFF657 0.68 -0.1 708,322 + GFF657 0.71 -0.5 708,323 - GFF657 0.71 -0.5 708,493 + GFF657 0.83 +1.1 708,493 + GFF657 0.83 +0.3 708,493 + GFF657 0.83 +0.6 708,494 - GFF657 0.83 -0.5 708,494 - GFF657 0.83 +0.7 708,494 - GFF657 0.83 +1.6 708,494 - GFF657 0.83 -0.7 708,494 - GFF657 0.83 +0.2 708,562 + GFF657 0.87 -0.9 708,563 - GFF657 0.88 -0.9 708,825 + -0.5 708,826 - -0.4 708,982 + GFF658 0.23 +0.6 709,156 + GFF658 0.40 -0.6 709,157 - GFF658 0.40 -0.5 709,214 + GFF658 0.46 +0.5 709,215 - GFF658 0.46 -0.2 709,380 + GFF658 0.63 -0.8 709,693 + -1.4 709,694 - +0.7
Or see this region's nucleotide sequence