Strain Fitness in Xanthobacter sp. DMC5 around GFF656

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF655 and GFF656 overlap by 4 nucleotidesGFF656 and GFF657 are separated by 305 nucleotides GFF655 - Nicotinate dehydrogenase subunit B, at 702,927 to 706,475 GFF655 GFF656 - Nicotinate dehydrogenase subunit A, at 706,472 to 706,960 GFF656 GFF657 - 6-hydroxynicotinate reductase, at 707,266 to 708,747 GFF657 Position (kb) 706 707Strain fitness (log2 ratio) -1 0 1at 705.485 kb on - strand, within GFF655at 705.803 kb on - strand, within GFF655at 705.859 kb on + strand, within GFF655at 705.860 kb on - strand, within GFF655at 705.860 kb on - strand, within GFF655at 705.890 kb on + strand, within GFF655at 706.001 kb on - strand, within GFF655at 706.656 kb on + strand, within GFF656at 706.884 kb on + strand, within GFF656at 706.885 kb on - strand, within GFF656at 706.885 kb on - strand, within GFF656at 707.218 kb on + strandat 707.219 kb on - strandat 707.341 kb on + strandat 707.341 kb on + strandat 707.341 kb on + strandat 707.342 kb on - strandat 707.342 kb on - strandat 707.377 kb on + strandat 707.378 kb on - strandat 707.545 kb on + strand, within GFF657at 707.636 kb on - strand, within GFF657at 707.636 kb on - strand, within GFF657

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
705,485 - GFF655 0.72 +0.4
705,803 - GFF655 0.81 +0.8
705,859 + GFF655 0.83 -1.6
705,860 - GFF655 0.83 +0.5
705,860 - GFF655 0.83 +0.2
705,890 + GFF655 0.83 +1.1
706,001 - GFF655 0.87 -0.7
706,656 + GFF656 0.38 -0.7
706,884 + GFF656 0.84 -1.2
706,885 - GFF656 0.84 +1.2
706,885 - GFF656 0.84 -0.3
707,218 + +0.2
707,219 - +0.9
707,341 + +0.1
707,341 + -0.3
707,341 + +0.1
707,342 - -0.3
707,342 - +1.1
707,377 + +0.2
707,378 - +0.9
707,545 + GFF657 0.19 +1.4
707,636 - GFF657 0.25 -0.0
707,636 - GFF657 0.25 -0.5

Or see this region's nucleotide sequence