Strain Fitness in Xanthobacter sp. DMC5 around GFF566

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF565 and GFF566 overlap by 4 nucleotidesGFF566 and GFF567 are separated by 46 nucleotidesGFF567 and GFF568 are separated by 248 nucleotides GFF565 - Queuine tRNA-ribosyltransferase, at 605,272 to 606,426 GFF565 GFF566 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 606,423 to 607,511 GFF566 GFF567 - hypothetical protein, at 607,558 to 608,160 GFF567 GFF568 - hypothetical protein, at 608,409 to 608,687 GFF568 Position (kb) 606 607 608Strain fitness (log2 ratio) -2 -1 0 1at 605.644 kb on + strand, within GFF565at 606.225 kb on - strand, within GFF565at 606.464 kb on - strandat 606.469 kb on + strandat 606.469 kb on + strandat 606.502 kb on + strandat 606.503 kb on - strandat 606.503 kb on - strandat 606.973 kb on + strand, within GFF566at 606.973 kb on + strand, within GFF566at 607.019 kb on - strand, within GFF566at 607.115 kb on + strand, within GFF566at 607.583 kb on + strandat 607.584 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
605,644 + GFF565 0.32 -0.5
606,225 - GFF565 0.83 -0.7
606,464 - -2.6
606,469 + -0.9
606,469 + +1.3
606,502 + +0.7
606,503 - +0.7
606,503 - -1.1
606,973 + GFF566 0.51 -0.5
606,973 + GFF566 0.51 +0.2
607,019 - GFF566 0.55 +0.6
607,115 + GFF566 0.64 -1.7
607,583 + +1.3
607,584 - +0.3

Or see this region's nucleotide sequence