Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF508 and GFF509 are separated by 91 nucleotides GFF509 and GFF510 are separated by 48 nucleotides GFF510 and GFF511 are separated by 161 nucleotides
GFF508 - K(+)/H(+) antiporter NhaP2, at 537,677 to 539,455
GFF508
GFF509 - hypothetical protein, at 539,547 to 539,870
GFF509
GFF510 - Methionine aminotransferase, at 539,919 to 541,103
GFF510
GFF511 - Multidrug resistance protein MdtA, at 541,265 to 542,440
GFF511
Position (kb) 539
540
541
542 Strain fitness (log2 ratio) -2
-1
0
1 at 538.938 kb on - strand, within GFF508 at 539.073 kb on - strand, within GFF508 at 539.204 kb on + strand, within GFF508 at 539.205 kb on - strand, within GFF508 at 539.354 kb on + strand at 539.354 kb on + strand at 539.354 kb on + strand at 539.355 kb on - strand at 539.453 kb on + strand at 539.453 kb on + strand at 539.453 kb on + strand at 539.530 kb on - strand at 539.868 kb on + strand at 539.869 kb on - strand at 539.869 kb on - strand at 539.936 kb on + strand at 539.937 kb on - strand at 539.937 kb on - strand at 539.962 kb on - strand at 540.017 kb on - strand at 540.114 kb on + strand, within GFF510 at 540.115 kb on - strand, within GFF510 at 540.165 kb on + strand, within GFF510 at 540.309 kb on + strand, within GFF510 at 540.309 kb on + strand, within GFF510 at 540.310 kb on - strand, within GFF510 at 540.310 kb on - strand, within GFF510 at 540.498 kb on + strand, within GFF510 at 540.519 kb on + strand, within GFF510 at 540.620 kb on - strand, within GFF510 at 540.787 kb on - strand, within GFF510 at 540.885 kb on + strand, within GFF510 at 540.885 kb on + strand, within GFF510 at 540.996 kb on + strand at 541.151 kb on + strand at 541.152 kb on - strand at 541.152 kb on - strand at 541.170 kb on + strand at 541.378 kb on + strand at 541.378 kb on + strand at 541.602 kb on - strand, within GFF511 at 541.706 kb on + strand, within GFF511 at 541.706 kb on + strand, within GFF511 at 541.707 kb on - strand, within GFF511 at 541.838 kb on + strand, within GFF511 at 541.839 kb on - strand, within GFF511 at 541.842 kb on - strand, within GFF511 at 541.842 kb on - strand, within GFF511 at 541.952 kb on + strand, within GFF511 at 541.952 kb on + strand, within GFF511 at 541.952 kb on + strand, within GFF511 at 541.952 kb on + strand, within GFF511 at 541.952 kb on + strand, within GFF511 at 541.952 kb on + strand, within GFF511 at 541.952 kb on + strand, within GFF511 at 541.952 kb on + strand, within GFF511 at 541.952 kb on + strand, within GFF511 at 541.952 kb on + strand, within GFF511 at 541.953 kb on - strand, within GFF511 at 541.953 kb on - strand, within GFF511 at 541.953 kb on - strand, within GFF511 at 541.953 kb on - strand, within GFF511 at 541.953 kb on - strand, within GFF511 at 541.953 kb on - strand, within GFF511 at 541.953 kb on - strand, within GFF511 at 541.980 kb on - strand, within GFF511 at 541.980 kb on - strand, within GFF511 at 541.980 kb on - strand, within GFF511
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 538,938 - GFF508 0.71 +1.3 539,073 - GFF508 0.78 +0.4 539,204 + GFF508 0.86 -0.3 539,205 - GFF508 0.86 -0.1 539,354 + -0.4 539,354 + +0.2 539,354 + +1.3 539,355 - +0.5 539,453 + -0.4 539,453 + -0.5 539,453 + -0.9 539,530 - +0.0 539,868 + -2.5 539,869 - -0.1 539,869 - -0.3 539,936 + +1.2 539,937 - +0.5 539,937 - -0.3 539,962 - -1.6 540,017 - +0.9 540,114 + GFF510 0.16 +0.2 540,115 - GFF510 0.17 +0.3 540,165 + GFF510 0.21 -0.7 540,309 + GFF510 0.33 +0.9 540,309 + GFF510 0.33 +0.9 540,310 - GFF510 0.33 +0.2 540,310 - GFF510 0.33 +0.2 540,498 + GFF510 0.49 +1.1 540,519 + GFF510 0.51 +0.5 540,620 - GFF510 0.59 +1.6 540,787 - GFF510 0.73 +0.7 540,885 + GFF510 0.82 +0.4 540,885 + GFF510 0.82 -0.1 540,996 + +1.6 541,151 + +0.8 541,152 - +0.2 541,152 - +0.6 541,170 + -0.1 541,378 + -0.4 541,378 + -0.2 541,602 - GFF511 0.29 -0.4 541,706 + GFF511 0.38 +0.6 541,706 + GFF511 0.38 +0.9 541,707 - GFF511 0.38 -0.3 541,838 + GFF511 0.49 -0.1 541,839 - GFF511 0.49 +0.0 541,842 - GFF511 0.49 +0.9 541,842 - GFF511 0.49 +0.4 541,952 + GFF511 0.58 -0.2 541,952 + GFF511 0.58 -0.4 541,952 + GFF511 0.58 +1.1 541,952 + GFF511 0.58 -2.0 541,952 + GFF511 0.58 -0.0 541,952 + GFF511 0.58 +0.3 541,952 + GFF511 0.58 -0.1 541,952 + GFF511 0.58 -0.7 541,952 + GFF511 0.58 -0.1 541,952 + GFF511 0.58 -0.2 541,953 - GFF511 0.59 +0.1 541,953 - GFF511 0.59 +0.3 541,953 - GFF511 0.59 +0.1 541,953 - GFF511 0.59 -1.1 541,953 - GFF511 0.59 -0.3 541,953 - GFF511 0.59 +0.1 541,953 - GFF511 0.59 -0.6 541,980 - GFF511 0.61 -0.8 541,980 - GFF511 0.61 -0.1 541,980 - GFF511 0.61 +0.2
Or see this region's nucleotide sequence