Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF490 and GFF491 overlap by 4 nucleotides GFF491 and GFF492 are separated by 12 nucleotides
GFF490 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 520,778 to 521,482
GFF490
GFF491 - Vitamin B12 import ATP-binding protein BtuD, at 521,479 to 523,233
GFF491
GFF492 - High-affinity branched-chain amino acid transport system permease protein LivH, at 523,246 to 524,142
GFF492
Position (kb) 521
522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 520.534 kb on + strand at 520.535 kb on - strand at 520.535 kb on - strand at 520.613 kb on + strand at 520.614 kb on - strand at 520.614 kb on - strand at 520.780 kb on - strand at 520.788 kb on + strand at 520.788 kb on + strand at 520.789 kb on - strand at 520.883 kb on - strand, within GFF490 at 521.461 kb on - strand at 521.789 kb on + strand, within GFF491 at 521.789 kb on + strand, within GFF491 at 521.790 kb on - strand, within GFF491 at 521.790 kb on - strand, within GFF491 at 522.115 kb on - strand, within GFF491 at 522.178 kb on - strand, within GFF491 at 522.206 kb on + strand, within GFF491 at 522.207 kb on - strand, within GFF491 at 522.207 kb on - strand, within GFF491 at 522.383 kb on + strand, within GFF491 at 522.383 kb on + strand, within GFF491 at 522.383 kb on + strand, within GFF491 at 522.383 kb on + strand, within GFF491 at 522.384 kb on - strand, within GFF491 at 522.710 kb on + strand, within GFF491 at 522.710 kb on + strand, within GFF491 at 522.710 kb on + strand, within GFF491 at 522.765 kb on - strand, within GFF491 at 522.902 kb on + strand, within GFF491 at 522.903 kb on - strand, within GFF491 at 522.941 kb on - strand, within GFF491 at 522.941 kb on - strand, within GFF491 at 523.001 kb on + strand, within GFF491 at 523.002 kb on - strand, within GFF491 at 523.002 kb on - strand, within GFF491 at 523.002 kb on - strand, within GFF491 at 523.002 kb on - strand, within GFF491 at 523.002 kb on - strand, within GFF491 at 523.002 kb on - strand, within GFF491 at 523.002 kb on - strand, within GFF491 at 523.028 kb on + strand, within GFF491 at 523.028 kb on + strand, within GFF491 at 523.028 kb on + strand, within GFF491 at 523.029 kb on - strand, within GFF491 at 523.029 kb on - strand, within GFF491 at 523.044 kb on - strand, within GFF491 at 523.121 kb on + strand at 523.205 kb on + strand at 523.352 kb on + strand, within GFF492 at 523.353 kb on - strand, within GFF492 at 523.613 kb on + strand, within GFF492 at 523.614 kb on - strand, within GFF492 at 523.710 kb on + strand, within GFF492 at 523.807 kb on - strand, within GFF492 at 523.851 kb on - strand, within GFF492 at 523.910 kb on + strand, within GFF492 at 524.082 kb on + strand at 524.082 kb on + strand at 524.083 kb on - strand at 524.084 kb on + strand at 524.084 kb on + strand at 524.085 kb on - strand at 524.085 kb on - strand at 524.085 kb on - strand at 524.085 kb on - strand at 524.146 kb on - strand at 524.185 kb on + strand at 524.185 kb on + strand at 524.185 kb on + strand at 524.186 kb on - strand at 524.186 kb on - strand at 524.186 kb on - strand at 524.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 520,534 + +0.6 520,535 - -0.4 520,535 - -1.6 520,613 + +1.0 520,614 - +0.2 520,614 - +1.0 520,780 - +0.7 520,788 + +0.3 520,788 + -0.5 520,789 - +0.3 520,883 - GFF490 0.15 -1.3 521,461 - -0.0 521,789 + GFF491 0.18 -0.6 521,789 + GFF491 0.18 -0.6 521,790 - GFF491 0.18 +0.1 521,790 - GFF491 0.18 -1.2 522,115 - GFF491 0.36 -0.3 522,178 - GFF491 0.40 +0.8 522,206 + GFF491 0.41 -0.5 522,207 - GFF491 0.41 -1.6 522,207 - GFF491 0.41 -0.5 522,383 + GFF491 0.52 +0.5 522,383 + GFF491 0.52 -0.6 522,383 + GFF491 0.52 +0.7 522,383 + GFF491 0.52 +0.2 522,384 - GFF491 0.52 +0.0 522,710 + GFF491 0.70 +0.4 522,710 + GFF491 0.70 +1.5 522,710 + GFF491 0.70 +0.7 522,765 - GFF491 0.73 -0.9 522,902 + GFF491 0.81 -0.2 522,903 - GFF491 0.81 +1.2 522,941 - GFF491 0.83 +0.4 522,941 - GFF491 0.83 -0.3 523,001 + GFF491 0.87 +0.7 523,002 - GFF491 0.87 +0.3 523,002 - GFF491 0.87 +1.3 523,002 - GFF491 0.87 -0.8 523,002 - GFF491 0.87 +0.3 523,002 - GFF491 0.87 +0.1 523,002 - GFF491 0.87 +0.4 523,002 - GFF491 0.87 -0.9 523,028 + GFF491 0.88 +0.7 523,028 + GFF491 0.88 +0.0 523,028 + GFF491 0.88 +0.2 523,029 - GFF491 0.88 +0.3 523,029 - GFF491 0.88 -0.4 523,044 - GFF491 0.89 +1.2 523,121 + +0.2 523,205 + -0.3 523,352 + GFF492 0.12 +0.2 523,353 - GFF492 0.12 +0.2 523,613 + GFF492 0.41 -2.9 523,614 - GFF492 0.41 +0.4 523,710 + GFF492 0.52 -0.6 523,807 - GFF492 0.63 -1.6 523,851 - GFF492 0.67 +0.1 523,910 + GFF492 0.74 +1.0 524,082 + -0.5 524,082 + +1.3 524,083 - +1.4 524,084 + +0.3 524,084 + -0.7 524,085 - +0.2 524,085 - -0.7 524,085 - -1.6 524,085 - -0.1 524,146 - +0.2 524,185 + +0.5 524,185 + +0.2 524,185 + +1.9 524,186 - -0.5 524,186 - +0.2 524,186 - +0.1 524,186 - +0.3
Or see this region's nucleotide sequence