Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4830 and GFF4831 overlap by 4 nucleotides GFF4831 and GFF4832 overlap by 13 nucleotides GFF4832 and GFF4833 are separated by 5 nucleotides GFF4833 and GFF4834 overlap by 1 nucleotides
GFF4830 - hypothetical protein, at 70,086 to 71,294
GFF4830
GFF4831 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 71,291 to 71,725
GFF4831
GFF4832 - hypothetical protein, at 71,713 to 72,201
GFF4832
GFF4833 - Adaptive-response sensory-kinase SasA, at 72,207 to 73,943
GFF4833
GFF4834 - Regulatory protein AtoC, at 73,943 to 75,337
GFF4834
Position (kb) 72
73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 71.335 kb on + strand, within GFF4831 at 71.335 kb on + strand, within GFF4831 at 71.335 kb on + strand, within GFF4831 at 71.336 kb on - strand, within GFF4831 at 71.336 kb on - strand, within GFF4831 at 71.472 kb on - strand, within GFF4831 at 71.472 kb on - strand, within GFF4831 at 71.472 kb on - strand, within GFF4831 at 71.483 kb on + strand, within GFF4831 at 71.512 kb on + strand, within GFF4831 at 71.552 kb on + strand, within GFF4831 at 71.552 kb on + strand, within GFF4831 at 71.552 kb on + strand, within GFF4831 at 71.552 kb on + strand, within GFF4831 at 71.553 kb on - strand, within GFF4831 at 71.553 kb on - strand, within GFF4831 at 71.553 kb on - strand, within GFF4831 at 71.553 kb on - strand, within GFF4831 at 71.937 kb on + strand, within GFF4832 at 72.011 kb on - strand, within GFF4832 at 72.170 kb on + strand at 72.199 kb on + strand at 72.199 kb on + strand at 72.199 kb on + strand at 72.199 kb on + strand at 72.200 kb on - strand at 72.206 kb on + strand at 72.206 kb on + strand at 72.206 kb on + strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.413 kb on - strand, within GFF4833 at 72.413 kb on - strand, within GFF4833 at 72.540 kb on + strand, within GFF4833 at 72.541 kb on - strand, within GFF4833 at 72.541 kb on - strand, within GFF4833 at 72.541 kb on - strand, within GFF4833 at 72.773 kb on - strand, within GFF4833 at 72.773 kb on - strand, within GFF4833 at 72.773 kb on - strand, within GFF4833 at 73.156 kb on - strand, within GFF4833 at 73.156 kb on - strand, within GFF4833 at 73.239 kb on - strand, within GFF4833 at 73.239 kb on - strand, within GFF4833 at 73.467 kb on + strand, within GFF4833 at 73.467 kb on + strand, within GFF4833 at 73.467 kb on + strand, within GFF4833 at 73.468 kb on - strand, within GFF4833 at 73.624 kb on - strand, within GFF4833 at 73.771 kb on + strand at 73.771 kb on + strand at 73.771 kb on + strand at 73.772 kb on - strand at 73.951 kb on + strand at 73.952 kb on - strand at 73.965 kb on + strand at 73.965 kb on + strand at 73.966 kb on - strand at 73.966 kb on - strand at 73.966 kb on - strand at 74.073 kb on - strand at 74.144 kb on - strand, within GFF4834 at 74.198 kb on + strand, within GFF4834 at 74.198 kb on + strand, within GFF4834 at 74.198 kb on + strand, within GFF4834 at 74.198 kb on + strand, within GFF4834 at 74.198 kb on + strand, within GFF4834 at 74.199 kb on - strand, within GFF4834 at 74.199 kb on - strand, within GFF4834 at 74.199 kb on - strand, within GFF4834 at 74.199 kb on - strand, within GFF4834 at 74.249 kb on + strand, within GFF4834 at 74.249 kb on + strand, within GFF4834 at 74.250 kb on - strand, within GFF4834 at 74.250 kb on - strand, within GFF4834 at 74.250 kb on - strand, within GFF4834 at 74.250 kb on - strand, within GFF4834 at 74.507 kb on + strand, within GFF4834 at 74.507 kb on + strand, within GFF4834 at 74.508 kb on - strand, within GFF4834 at 74.852 kb on + strand, within GFF4834 at 74.852 kb on + strand, within GFF4834 at 74.852 kb on + strand, within GFF4834 at 74.853 kb on - strand, within GFF4834 at 74.853 kb on - strand, within GFF4834 at 74.853 kb on - strand, within GFF4834 at 74.853 kb on - strand, within GFF4834
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 71,335 + GFF4831 0.10 -0.8 71,335 + GFF4831 0.10 +0.4 71,335 + GFF4831 0.10 -0.6 71,336 - GFF4831 0.10 -1.5 71,336 - GFF4831 0.10 +0.3 71,472 - GFF4831 0.42 -0.5 71,472 - GFF4831 0.42 +0.1 71,472 - GFF4831 0.42 -1.1 71,483 + GFF4831 0.44 +0.1 71,512 + GFF4831 0.51 -0.3 71,552 + GFF4831 0.60 -0.4 71,552 + GFF4831 0.60 -0.1 71,552 + GFF4831 0.60 +0.3 71,552 + GFF4831 0.60 -0.4 71,553 - GFF4831 0.60 -0.1 71,553 - GFF4831 0.60 -1.6 71,553 - GFF4831 0.60 -0.3 71,553 - GFF4831 0.60 -0.9 71,937 + GFF4832 0.46 +0.4 72,011 - GFF4832 0.61 +1.2 72,170 + +1.4 72,199 + -0.3 72,199 + -0.8 72,199 + +2.2 72,199 + -1.7 72,200 - +0.2 72,206 + -0.4 72,206 + +1.4 72,206 + -0.0 72,207 - -0.7 72,207 - +0.6 72,207 - +0.0 72,207 - -0.7 72,207 - +1.6 72,207 - -1.2 72,413 - GFF4833 0.12 -0.0 72,413 - GFF4833 0.12 -0.9 72,540 + GFF4833 0.19 -0.3 72,541 - GFF4833 0.19 +0.2 72,541 - GFF4833 0.19 +0.3 72,541 - GFF4833 0.19 +0.0 72,773 - GFF4833 0.33 -0.1 72,773 - GFF4833 0.33 +0.6 72,773 - GFF4833 0.33 -0.1 73,156 - GFF4833 0.55 +0.4 73,156 - GFF4833 0.55 +1.3 73,239 - GFF4833 0.59 -0.5 73,239 - GFF4833 0.59 -0.2 73,467 + GFF4833 0.73 +1.9 73,467 + GFF4833 0.73 -1.6 73,467 + GFF4833 0.73 +0.3 73,468 - GFF4833 0.73 -1.2 73,624 - GFF4833 0.82 -0.3 73,771 + +0.9 73,771 + +0.3 73,771 + -0.0 73,772 - -0.1 73,951 + +0.5 73,952 - +1.3 73,965 + -0.2 73,965 + +0.5 73,966 - +0.7 73,966 - -0.7 73,966 - +0.3 74,073 - +0.5 74,144 - GFF4834 0.14 -0.4 74,198 + GFF4834 0.18 +0.7 74,198 + GFF4834 0.18 -1.0 74,198 + GFF4834 0.18 -0.5 74,198 + GFF4834 0.18 +1.1 74,198 + GFF4834 0.18 +0.2 74,199 - GFF4834 0.18 -0.8 74,199 - GFF4834 0.18 -0.0 74,199 - GFF4834 0.18 -0.1 74,199 - GFF4834 0.18 +0.7 74,249 + GFF4834 0.22 +0.4 74,249 + GFF4834 0.22 +0.1 74,250 - GFF4834 0.22 +0.8 74,250 - GFF4834 0.22 -0.8 74,250 - GFF4834 0.22 -0.5 74,250 - GFF4834 0.22 -1.4 74,507 + GFF4834 0.40 -3.2 74,507 + GFF4834 0.40 -0.3 74,508 - GFF4834 0.41 +0.4 74,852 + GFF4834 0.65 -0.3 74,852 + GFF4834 0.65 -2.0 74,852 + GFF4834 0.65 -0.7 74,853 - GFF4834 0.65 +1.1 74,853 - GFF4834 0.65 +0.0 74,853 - GFF4834 0.65 +0.5 74,853 - GFF4834 0.65 -0.3
Or see this region's nucleotide sequence