Strain Fitness in Xanthobacter sp. DMC5 around GFF4829

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4827 and GFF4828 overlap by 4 nucleotidesGFF4828 and GFF4829 are separated by 8 nucleotidesGFF4829 and GFF4830 overlap by 11 nucleotides GFF4827 - hypothetical protein, at 67,876 to 68,799 GFF4827 GFF4828 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 68,796 to 69,161 GFF4828 GFF4829 - Thermostable monoacylglycerol lipase, at 69,170 to 70,096 GFF4829 GFF4830 - hypothetical protein, at 70,086 to 71,294 GFF4830 Position (kb) 69 70 71Strain fitness (log2 ratio) -1 0 1at 68.356 kb on + strand, within GFF4827at 68.359 kb on + strand, within GFF4827at 68.360 kb on - strand, within GFF4827at 68.360 kb on - strand, within GFF4827at 68.650 kb on + strand, within GFF4827at 68.696 kb on - strand, within GFF4827at 68.803 kb on + strandat 68.803 kb on + strandat 68.803 kb on + strandat 68.803 kb on + strandat 68.804 kb on - strandat 68.804 kb on - strandat 68.804 kb on - strandat 68.964 kb on + strand, within GFF4828at 68.965 kb on - strand, within GFF4828at 68.965 kb on - strand, within GFF4828at 68.965 kb on - strand, within GFF4828at 69.105 kb on + strand, within GFF4828at 69.105 kb on + strand, within GFF4828at 69.105 kb on + strand, within GFF4828at 69.105 kb on + strand, within GFF4828at 69.106 kb on - strand, within GFF4828at 69.106 kb on - strand, within GFF4828at 69.106 kb on - strand, within GFF4828at 69.368 kb on + strand, within GFF4829at 69.368 kb on + strand, within GFF4829at 69.369 kb on - strand, within GFF4829at 69.369 kb on - strand, within GFF4829at 69.412 kb on + strand, within GFF4829at 69.413 kb on - strand, within GFF4829at 69.413 kb on - strand, within GFF4829at 69.413 kb on - strand, within GFF4829at 69.413 kb on - strand, within GFF4829at 69.501 kb on + strand, within GFF4829at 69.501 kb on + strand, within GFF4829at 69.501 kb on + strand, within GFF4829at 69.501 kb on + strand, within GFF4829at 69.501 kb on + strand, within GFF4829at 69.502 kb on - strand, within GFF4829at 69.524 kb on + strand, within GFF4829at 69.525 kb on - strand, within GFF4829at 69.620 kb on + strand, within GFF4829at 69.620 kb on + strand, within GFF4829at 69.887 kb on + strand, within GFF4829at 69.887 kb on + strand, within GFF4829at 69.887 kb on + strand, within GFF4829at 69.887 kb on + strand, within GFF4829at 69.887 kb on + strand, within GFF4829at 69.887 kb on + strand, within GFF4829at 69.888 kb on - strand, within GFF4829at 69.888 kb on - strand, within GFF4829at 69.888 kb on - strand, within GFF4829at 69.961 kb on - strand, within GFF4829at 69.961 kb on - strand, within GFF4829at 70.233 kb on + strand, within GFF4830at 70.234 kb on - strand, within GFF4830at 70.342 kb on - strand, within GFF4830at 70.455 kb on - strand, within GFF4830at 70.638 kb on + strand, within GFF4830at 70.704 kb on + strand, within GFF4830at 70.705 kb on - strand, within GFF4830at 70.705 kb on - strand, within GFF4830at 70.890 kb on + strand, within GFF4830at 70.891 kb on - strand, within GFF4830at 70.891 kb on - strand, within GFF4830at 70.941 kb on + strand, within GFF4830at 70.941 kb on + strand, within GFF4830at 71.008 kb on - strand, within GFF4830at 71.052 kb on + strand, within GFF4830at 71.053 kb on - strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.061 kb on - strand, within GFF4830at 71.061 kb on - strand, within GFF4830at 71.061 kb on - strand, within GFF4830

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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68,356 + GFF4827 0.52 -0.3
68,359 + GFF4827 0.52 +0.6
68,360 - GFF4827 0.52 -0.1
68,360 - GFF4827 0.52 -1.3
68,650 + GFF4827 0.84 +0.1
68,696 - GFF4827 0.89 +0.3
68,803 + +0.7
68,803 + -0.4
68,803 + -0.0
68,803 + -1.1
68,804 - +0.4
68,804 - +1.3
68,804 - +0.0
68,964 + GFF4828 0.46 -1.5
68,965 - GFF4828 0.46 -0.3
68,965 - GFF4828 0.46 +0.2
68,965 - GFF4828 0.46 -0.7
69,105 + GFF4828 0.84 -1.5
69,105 + GFF4828 0.84 -0.4
69,105 + GFF4828 0.84 +0.2
69,105 + GFF4828 0.84 -1.7
69,106 - GFF4828 0.85 -0.3
69,106 - GFF4828 0.85 +1.7
69,106 - GFF4828 0.85 -0.2
69,368 + GFF4829 0.21 -0.4
69,368 + GFF4829 0.21 +0.3
69,369 - GFF4829 0.21 -0.1
69,369 - GFF4829 0.21 +0.3
69,412 + GFF4829 0.26 +1.1
69,413 - GFF4829 0.26 +0.1
69,413 - GFF4829 0.26 -0.3
69,413 - GFF4829 0.26 +0.5
69,413 - GFF4829 0.26 +0.0
69,501 + GFF4829 0.36 +0.8
69,501 + GFF4829 0.36 -0.3
69,501 + GFF4829 0.36 +0.3
69,501 + GFF4829 0.36 -0.4
69,501 + GFF4829 0.36 +0.3
69,502 - GFF4829 0.36 -1.0
69,524 + GFF4829 0.38 +0.8
69,525 - GFF4829 0.38 -0.8
69,620 + GFF4829 0.49 +0.3
69,620 + GFF4829 0.49 +0.8
69,887 + GFF4829 0.77 -0.1
69,887 + GFF4829 0.77 +0.3
69,887 + GFF4829 0.77 -0.0
69,887 + GFF4829 0.77 +0.7
69,887 + GFF4829 0.77 +0.6
69,887 + GFF4829 0.77 -1.6
69,888 - GFF4829 0.77 +0.1
69,888 - GFF4829 0.77 +0.2
69,888 - GFF4829 0.77 +0.7
69,961 - GFF4829 0.85 -0.5
69,961 - GFF4829 0.85 -0.2
70,233 + GFF4830 0.12 +1.2
70,234 - GFF4830 0.12 +1.3
70,342 - GFF4830 0.21 +0.9
70,455 - GFF4830 0.31 +0.5
70,638 + GFF4830 0.46 +0.2
70,704 + GFF4830 0.51 +1.4
70,705 - GFF4830 0.51 +0.7
70,705 - GFF4830 0.51 -0.4
70,890 + GFF4830 0.67 -0.4
70,891 - GFF4830 0.67 -0.9
70,891 - GFF4830 0.67 -0.6
70,941 + GFF4830 0.71 -0.5
70,941 + GFF4830 0.71 -0.4
71,008 - GFF4830 0.76 +0.6
71,052 + GFF4830 0.80 -0.3
71,053 - GFF4830 0.80 -0.1
71,060 + GFF4830 0.81 -0.4
71,060 + GFF4830 0.81 -0.3
71,060 + GFF4830 0.81 -0.1
71,060 + GFF4830 0.81 -1.2
71,060 + GFF4830 0.81 +0.7
71,060 + GFF4830 0.81 +0.5
71,060 + GFF4830 0.81 -0.3
71,061 - GFF4830 0.81 +1.1
71,061 - GFF4830 0.81 -1.2
71,061 - GFF4830 0.81 -0.5

Or see this region's nucleotide sequence