Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4825 and GFF4826 overlap by 8 nucleotides GFF4826 and GFF4827 are separated by 5 nucleotides GFF4827 and GFF4828 overlap by 4 nucleotides
GFF4825 - 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase, at 65,794 to 66,468
GFF4825
GFF4826 - 5-aminovalerate aminotransferase DavT, at 66,461 to 67,870
GFF4826
GFF4827 - hypothetical protein, at 67,876 to 68,799
GFF4827
GFF4828 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 68,796 to 69,161
GFF4828
Position (kb) 66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 65.517 kb on + strand at 65.517 kb on + strand at 65.517 kb on + strand at 65.517 kb on + strand at 65.547 kb on + strand at 65.547 kb on + strand at 65.547 kb on + strand at 65.547 kb on + strand at 65.547 kb on + strand at 65.548 kb on - strand at 65.548 kb on - strand at 65.580 kb on + strand at 65.580 kb on + strand at 65.580 kb on + strand at 65.580 kb on + strand at 65.580 kb on + strand at 65.581 kb on - strand at 65.581 kb on - strand at 65.581 kb on - strand at 65.581 kb on - strand at 65.581 kb on - strand at 65.582 kb on + strand at 65.582 kb on + strand at 65.583 kb on - strand at 65.583 kb on - strand at 65.583 kb on - strand at 65.583 kb on - strand at 65.583 kb on - strand at 65.612 kb on + strand at 65.705 kb on - strand at 65.741 kb on + strand at 65.844 kb on + strand at 66.458 kb on + strand at 66.458 kb on + strand at 66.458 kb on + strand at 66.458 kb on + strand at 66.458 kb on + strand at 66.459 kb on - strand at 66.459 kb on - strand at 66.459 kb on - strand at 66.459 kb on - strand at 66.459 kb on - strand at 66.459 kb on - strand at 66.459 kb on - strand at 66.534 kb on - strand at 66.534 kb on - strand at 66.534 kb on - strand at 66.534 kb on - strand at 66.551 kb on - strand at 66.551 kb on - strand at 66.551 kb on - strand at 66.551 kb on - strand at 66.560 kb on + strand at 66.650 kb on + strand, within GFF4826 at 66.671 kb on + strand, within GFF4826 at 66.741 kb on - strand, within GFF4826 at 66.741 kb on - strand, within GFF4826 at 66.741 kb on - strand, within GFF4826 at 66.962 kb on + strand, within GFF4826 at 66.963 kb on - strand, within GFF4826 at 66.963 kb on - strand, within GFF4826 at 67.023 kb on - strand, within GFF4826 at 67.061 kb on + strand, within GFF4826 at 67.062 kb on - strand, within GFF4826 at 67.062 kb on - strand, within GFF4826 at 67.062 kb on - strand, within GFF4826 at 67.109 kb on + strand, within GFF4826 at 67.110 kb on - strand, within GFF4826 at 67.110 kb on - strand, within GFF4826 at 67.110 kb on - strand, within GFF4826 at 67.149 kb on - strand, within GFF4826 at 67.160 kb on + strand, within GFF4826 at 67.160 kb on + strand, within GFF4826 at 67.160 kb on + strand, within GFF4826 at 67.161 kb on - strand, within GFF4826 at 67.190 kb on + strand, within GFF4826 at 67.190 kb on + strand, within GFF4826 at 67.191 kb on - strand, within GFF4826 at 67.191 kb on - strand, within GFF4826 at 67.191 kb on - strand, within GFF4826 at 67.287 kb on - strand, within GFF4826 at 67.761 kb on - strand at 67.770 kb on - strand at 67.885 kb on + strand at 68.071 kb on + strand, within GFF4827 at 68.071 kb on + strand, within GFF4827 at 68.071 kb on + strand, within GFF4827 at 68.072 kb on - strand, within GFF4827 at 68.072 kb on - strand, within GFF4827 at 68.356 kb on + strand, within GFF4827 at 68.359 kb on + strand, within GFF4827 at 68.360 kb on - strand, within GFF4827 at 68.360 kb on - strand, within GFF4827 at 68.650 kb on + strand, within GFF4827 at 68.696 kb on - strand, within GFF4827 at 68.803 kb on + strand at 68.803 kb on + strand at 68.803 kb on + strand at 68.803 kb on + strand at 68.804 kb on - strand at 68.804 kb on - strand at 68.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 65,517 + -0.8 65,517 + -0.0 65,517 + -0.6 65,517 + +0.0 65,547 + +0.2 65,547 + +0.4 65,547 + +0.5 65,547 + +1.4 65,547 + +0.6 65,548 - -0.6 65,548 - -0.3 65,580 + -1.5 65,580 + +1.5 65,580 + -0.6 65,580 + -0.3 65,580 + -0.7 65,581 - +2.1 65,581 - +0.7 65,581 - -0.2 65,581 - -2.8 65,581 - +0.6 65,582 + +0.8 65,582 + -1.5 65,583 - -0.7 65,583 - +1.4 65,583 - -0.7 65,583 - -0.9 65,583 - +0.1 65,612 + -0.4 65,705 - +0.2 65,741 + +1.1 65,844 + +0.5 66,458 + +0.8 66,458 + -1.3 66,458 + +0.1 66,458 + +0.7 66,458 + +0.5 66,459 - -0.3 66,459 - +1.3 66,459 - -0.3 66,459 - +0.4 66,459 - -0.5 66,459 - +0.8 66,459 - +0.7 66,534 - +1.2 66,534 - +1.4 66,534 - +0.9 66,534 - -0.2 66,551 - -0.3 66,551 - +0.2 66,551 - -0.5 66,551 - -1.1 66,560 + -2.8 66,650 + GFF4826 0.13 -0.1 66,671 + GFF4826 0.15 -1.2 66,741 - GFF4826 0.20 -0.6 66,741 - GFF4826 0.20 +0.1 66,741 - GFF4826 0.20 -0.3 66,962 + GFF4826 0.36 +0.6 66,963 - GFF4826 0.36 +0.9 66,963 - GFF4826 0.36 +0.7 67,023 - GFF4826 0.40 -0.3 67,061 + GFF4826 0.43 -0.6 67,062 - GFF4826 0.43 -0.3 67,062 - GFF4826 0.43 -0.7 67,062 - GFF4826 0.43 -0.5 67,109 + GFF4826 0.46 +0.5 67,110 - GFF4826 0.46 -0.7 67,110 - GFF4826 0.46 +0.2 67,110 - GFF4826 0.46 -0.5 67,149 - GFF4826 0.49 +0.7 67,160 + GFF4826 0.50 -0.7 67,160 + GFF4826 0.50 -1.6 67,160 + GFF4826 0.50 +1.0 67,161 - GFF4826 0.50 -0.0 67,190 + GFF4826 0.52 +1.1 67,190 + GFF4826 0.52 +0.1 67,191 - GFF4826 0.52 -1.5 67,191 - GFF4826 0.52 -1.4 67,191 - GFF4826 0.52 -0.9 67,287 - GFF4826 0.59 +0.4 67,761 - -0.2 67,770 - +0.3 67,885 + +0.6 68,071 + GFF4827 0.21 +0.8 68,071 + GFF4827 0.21 +0.1 68,071 + GFF4827 0.21 -1.0 68,072 - GFF4827 0.21 +0.1 68,072 - GFF4827 0.21 -0.3 68,356 + GFF4827 0.52 -0.3 68,359 + GFF4827 0.52 +0.6 68,360 - GFF4827 0.52 -0.1 68,360 - GFF4827 0.52 -1.3 68,650 + GFF4827 0.84 +0.1 68,696 - GFF4827 0.89 +0.3 68,803 + +0.7 68,803 + -0.4 68,803 + -0.0 68,803 + -1.1 68,804 - +0.4 68,804 - +1.3 68,804 - +0.0
Or see this region's nucleotide sequence