Strain Fitness in Xanthobacter sp. DMC5 around GFF4809

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4807 and GFF4808 are separated by 1 nucleotidesGFF4808 and GFF4809 overlap by 8 nucleotidesGFF4809 and GFF4810 are separated by 105 nucleotides GFF4807 - Lipopolysaccharide export system ATP-binding protein LptB, at 48,138 to 48,878 GFF4807 GFF4808 - hypothetical protein, at 48,880 to 49,803 GFF4808 GFF4809 - High-affinity branched-chain amino acid transport system permease protein LivH, at 49,796 to 50,671 GFF4809 GFF4810 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 50,777 to 51,991 GFF4810 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 48.918 kb on - strandat 48.984 kb on + strand, within GFF4808at 48.984 kb on + strand, within GFF4808at 48.984 kb on + strand, within GFF4808at 48.985 kb on - strand, within GFF4808at 49.013 kb on + strand, within GFF4808at 49.013 kb on + strand, within GFF4808at 49.013 kb on + strand, within GFF4808at 49.013 kb on + strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.088 kb on + strand, within GFF4808at 49.088 kb on + strand, within GFF4808at 49.089 kb on - strand, within GFF4808at 49.224 kb on + strand, within GFF4808at 49.307 kb on + strand, within GFF4808at 49.308 kb on - strand, within GFF4808at 49.308 kb on - strand, within GFF4808at 49.308 kb on - strand, within GFF4808at 49.431 kb on - strand, within GFF4808at 49.478 kb on + strand, within GFF4808at 49.478 kb on + strand, within GFF4808at 49.505 kb on + strand, within GFF4808at 49.505 kb on + strand, within GFF4808at 49.555 kb on - strand, within GFF4808at 49.605 kb on - strand, within GFF4808at 49.605 kb on - strand, within GFF4808at 49.605 kb on - strand, within GFF4808at 49.724 kb on + strandat 49.724 kb on + strandat 49.724 kb on + strandat 49.724 kb on + strandat 49.724 kb on + strandat 49.725 kb on - strandat 49.725 kb on - strandat 49.725 kb on - strandat 49.781 kb on + strandat 49.887 kb on + strand, within GFF4809at 49.887 kb on + strand, within GFF4809at 49.888 kb on - strand, within GFF4809at 49.888 kb on - strand, within GFF4809at 49.936 kb on + strand, within GFF4809at 49.936 kb on + strand, within GFF4809at 49.937 kb on - strand, within GFF4809at 49.937 kb on - strand, within GFF4809at 50.103 kb on + strand, within GFF4809at 50.103 kb on + strand, within GFF4809at 50.103 kb on + strand, within GFF4809at 50.104 kb on - strand, within GFF4809at 50.104 kb on - strand, within GFF4809at 50.190 kb on + strand, within GFF4809at 50.190 kb on + strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.246 kb on + strand, within GFF4809at 50.246 kb on + strand, within GFF4809at 50.246 kb on + strand, within GFF4809at 50.282 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.469 kb on + strand, within GFF4809at 50.469 kb on + strand, within GFF4809at 50.619 kb on + strandat 50.619 kb on + strandat 50.619 kb on + strandat 50.620 kb on - strandat 50.620 kb on - strandat 50.620 kb on - strandat 50.657 kb on + strandat 50.657 kb on + strandat 50.657 kb on + strandat 50.874 kb on + strandat 50.874 kb on + strandat 50.874 kb on + strandat 50.874 kb on + strandat 50.874 kb on + strandat 50.875 kb on - strandat 50.875 kb on - strandat 50.875 kb on - strandat 50.875 kb on - strandat 50.875 kb on - strandat 50.878 kb on + strandat 50.879 kb on - strandat 50.879 kb on - strandat 50.889 kb on + strandat 50.910 kb on + strand, within GFF4810at 50.910 kb on + strand, within GFF4810at 50.911 kb on - strand, within GFF4810at 51.000 kb on + strand, within GFF4810at 51.012 kb on + strand, within GFF4810at 51.012 kb on + strand, within GFF4810at 51.013 kb on - strand, within GFF4810at 51.013 kb on - strand, within GFF4810at 51.013 kb on - strand, within GFF4810at 51.013 kb on - strand, within GFF4810at 51.127 kb on + strand, within GFF4810at 51.127 kb on + strand, within GFF4810at 51.127 kb on + strand, within GFF4810at 51.128 kb on - strand, within GFF4810at 51.128 kb on - strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.130 kb on - strand, within GFF4810at 51.130 kb on - strand, within GFF4810at 51.130 kb on - strand, within GFF4810at 51.342 kb on + strand, within GFF4810at 51.343 kb on - strand, within GFF4810at 51.365 kb on + strand, within GFF4810at 51.366 kb on - strand, within GFF4810at 51.447 kb on + strand, within GFF4810at 51.447 kb on + strand, within GFF4810at 51.651 kb on + strand, within GFF4810at 51.651 kb on + strand, within GFF4810at 51.651 kb on + strand, within GFF4810at 51.652 kb on - strand, within GFF4810at 51.652 kb on - strand, within GFF4810

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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48,918 - +0.2
48,984 + GFF4808 0.11 -0.3
48,984 + GFF4808 0.11 +0.0
48,984 + GFF4808 0.11 +0.1
48,985 - GFF4808 0.11 +0.4
49,013 + GFF4808 0.14 -0.5
49,013 + GFF4808 0.14 +1.1
49,013 + GFF4808 0.14 -0.3
49,013 + GFF4808 0.14 +0.6
49,014 - GFF4808 0.15 +0.9
49,014 - GFF4808 0.15 +2.7
49,014 - GFF4808 0.15 -0.9
49,014 - GFF4808 0.15 +1.1
49,014 - GFF4808 0.15 +0.7
49,014 - GFF4808 0.15 +1.2
49,014 - GFF4808 0.15 -0.5
49,014 - GFF4808 0.15 -0.2
49,088 + GFF4808 0.23 +0.5
49,088 + GFF4808 0.23 -1.3
49,089 - GFF4808 0.23 -0.6
49,224 + GFF4808 0.37 -0.2
49,307 + GFF4808 0.46 -1.1
49,308 - GFF4808 0.46 +1.2
49,308 - GFF4808 0.46 -0.3
49,308 - GFF4808 0.46 +1.1
49,431 - GFF4808 0.60 +2.2
49,478 + GFF4808 0.65 +1.6
49,478 + GFF4808 0.65 +0.2
49,505 + GFF4808 0.68 +0.0
49,505 + GFF4808 0.68 -0.7
49,555 - GFF4808 0.73 +0.2
49,605 - GFF4808 0.78 +0.2
49,605 - GFF4808 0.78 -0.5
49,605 - GFF4808 0.78 +0.4
49,724 + +0.1
49,724 + -0.7
49,724 + +0.2
49,724 + +0.3
49,724 + +0.4
49,725 - +0.6
49,725 - -0.4
49,725 - +0.5
49,781 + +1.7
49,887 + GFF4809 0.10 -1.1
49,887 + GFF4809 0.10 -0.1
49,888 - GFF4809 0.11 +0.4
49,888 - GFF4809 0.11 +0.6
49,936 + GFF4809 0.16 -2.5
49,936 + GFF4809 0.16 +0.4
49,937 - GFF4809 0.16 -2.1
49,937 - GFF4809 0.16 +0.1
50,103 + GFF4809 0.35 -1.9
50,103 + GFF4809 0.35 -0.6
50,103 + GFF4809 0.35 +0.2
50,104 - GFF4809 0.35 -0.5
50,104 - GFF4809 0.35 -1.9
50,190 + GFF4809 0.45 +1.1
50,190 + GFF4809 0.45 +1.2
50,191 - GFF4809 0.45 +0.4
50,191 - GFF4809 0.45 +0.3
50,191 - GFF4809 0.45 -0.1
50,191 - GFF4809 0.45 -0.1
50,191 - GFF4809 0.45 -0.2
50,191 - GFF4809 0.45 -0.3
50,191 - GFF4809 0.45 +0.1
50,246 + GFF4809 0.51 -0.5
50,246 + GFF4809 0.51 +0.1
50,246 + GFF4809 0.51 -0.0
50,282 + GFF4809 0.55 -0.3
50,412 + GFF4809 0.70 -0.7
50,412 + GFF4809 0.70 +1.1
50,412 + GFF4809 0.70 +1.5
50,412 + GFF4809 0.70 -0.6
50,412 + GFF4809 0.70 -0.9
50,412 + GFF4809 0.70 +1.1
50,413 - GFF4809 0.70 -0.1
50,413 - GFF4809 0.70 +0.7
50,413 - GFF4809 0.70 -0.4
50,413 - GFF4809 0.70 -0.7
50,413 - GFF4809 0.70 -0.4
50,413 - GFF4809 0.70 -0.4
50,413 - GFF4809 0.70 -0.4
50,413 - GFF4809 0.70 -0.4
50,413 - GFF4809 0.70 +0.0
50,413 - GFF4809 0.70 -0.6
50,413 - GFF4809 0.70 +0.2
50,469 + GFF4809 0.77 +0.5
50,469 + GFF4809 0.77 -0.1
50,619 + -1.8
50,619 + -1.7
50,619 + +0.6
50,620 - +1.1
50,620 - -2.7
50,620 - +1.9
50,657 + +0.8
50,657 + -0.7
50,657 + +0.5
50,874 + -1.6
50,874 + +0.3
50,874 + +0.2
50,874 + +0.2
50,874 + +0.3
50,875 - +0.3
50,875 - -0.0
50,875 - -1.2
50,875 - +0.3
50,875 - -0.1
50,878 + +1.5
50,879 - -0.3
50,879 - -0.1
50,889 + +0.3
50,910 + GFF4810 0.11 -0.4
50,910 + GFF4810 0.11 +0.0
50,911 - GFF4810 0.11 -0.1
51,000 + GFF4810 0.18 +0.2
51,012 + GFF4810 0.19 -0.3
51,012 + GFF4810 0.19 +1.2
51,013 - GFF4810 0.19 +1.0
51,013 - GFF4810 0.19 -1.1
51,013 - GFF4810 0.19 -1.4
51,013 - GFF4810 0.19 +0.7
51,127 + GFF4810 0.29 +0.2
51,127 + GFF4810 0.29 +0.3
51,127 + GFF4810 0.29 -0.6
51,128 - GFF4810 0.29 -0.5
51,128 - GFF4810 0.29 -0.8
51,129 + GFF4810 0.29 -0.2
51,129 + GFF4810 0.29 +1.4
51,129 + GFF4810 0.29 +0.2
51,129 + GFF4810 0.29 -0.3
51,129 + GFF4810 0.29 -0.5
51,129 + GFF4810 0.29 -0.7
51,129 + GFF4810 0.29 -0.5
51,129 + GFF4810 0.29 +0.1
51,130 - GFF4810 0.29 -1.1
51,130 - GFF4810 0.29 +1.5
51,130 - GFF4810 0.29 +1.5
51,342 + GFF4810 0.47 +0.8
51,343 - GFF4810 0.47 -0.4
51,365 + GFF4810 0.48 -0.3
51,366 - GFF4810 0.48 +0.8
51,447 + GFF4810 0.55 -0.3
51,447 + GFF4810 0.55 -0.8
51,651 + GFF4810 0.72 +0.7
51,651 + GFF4810 0.72 -0.7
51,651 + GFF4810 0.72 +0.7
51,652 - GFF4810 0.72 -1.0
51,652 - GFF4810 0.72 +1.3

Or see this region's nucleotide sequence