Strain Fitness in Xanthobacter sp. DMC5 around GFF48

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF46 and GFF47 overlap by 4 nucleotidesGFF47 and GFF48 overlap by 154 nucleotidesGFF48 and GFF49 are separated by 99 nucleotides GFF46 - Putrescine transport system permease protein PotH, at 55,388 to 56,305 GFF46 GFF47 - Inner membrane ABC transporter permease protein YdcV, at 56,302 to 57,117 GFF47 GFF48 - hypothetical protein, at 56,964 to 57,383 GFF48 GFF49 - hypothetical protein, at 57,483 to 59,549 GFF49 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1at 56.265 kb on - strandat 56.389 kb on + strand, within GFF47at 56.390 kb on - strand, within GFF47at 56.447 kb on - strand, within GFF47at 56.478 kb on - strand, within GFF47at 56.611 kb on + strand, within GFF47at 56.612 kb on - strand, within GFF47at 56.965 kb on + strandat 56.965 kb on + strandat 57.148 kb on - strand, within GFF48at 57.439 kb on + strandat 57.439 kb on + strandat 57.440 kb on - strandat 57.440 kb on - strandat 57.440 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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56,265 - +0.4
56,389 + GFF47 0.11 +1.1
56,390 - GFF47 0.11 -0.9
56,447 - GFF47 0.18 +1.0
56,478 - GFF47 0.22 +0.5
56,611 + GFF47 0.38 +0.1
56,612 - GFF47 0.38 -2.0
56,965 + -0.7
56,965 + -0.4
57,148 - GFF48 0.44 +0.2
57,439 + +0.2
57,439 + -0.6
57,440 - -0.0
57,440 - +0.1
57,440 - +1.0

Or see this region's nucleotide sequence