Strain Fitness in Xanthobacter sp. DMC5 around GFF4791

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4789 and GFF4790 are separated by 17 nucleotidesGFF4790 and GFF4791 overlap by 4 nucleotidesGFF4791 and GFF4792 overlap by 4 nucleotidesGFF4792 and GFF4793 are separated by 139 nucleotides GFF4789 - hypothetical protein, at 29,902 to 31,284 GFF4789 GFF4790 - High-affinity branched-chain amino acid transport system permease protein LivH, at 31,302 to 32,177 GFF4790 GFF4791 - Vitamin B12 import ATP-binding protein BtuD, at 32,174 to 33,982 GFF4791 GFF4792 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 33,979 to 34,689 GFF4792 GFF4793 - hypothetical protein, at 34,829 to 35,041 GFF4793 Position (kb) 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 31.202 kb on + strandat 31.203 kb on - strandat 31.359 kb on + strandat 31.359 kb on + strandat 31.360 kb on - strandat 31.360 kb on - strandat 31.445 kb on + strand, within GFF4790at 31.445 kb on + strand, within GFF4790at 31.446 kb on - strand, within GFF4790at 31.446 kb on - strand, within GFF4790at 31.446 kb on - strand, within GFF4790at 31.446 kb on - strand, within GFF4790at 31.449 kb on + strand, within GFF4790at 31.449 kb on + strand, within GFF4790at 31.450 kb on - strand, within GFF4790at 31.491 kb on + strand, within GFF4790at 31.491 kb on + strand, within GFF4790at 31.546 kb on - strand, within GFF4790at 31.861 kb on + strand, within GFF4790at 31.861 kb on + strand, within GFF4790at 31.862 kb on - strand, within GFF4790at 31.862 kb on - strand, within GFF4790at 31.862 kb on - strand, within GFF4790at 31.862 kb on - strand, within GFF4790at 31.879 kb on + strand, within GFF4790at 31.880 kb on - strand, within GFF4790at 31.880 kb on - strand, within GFF4790at 31.928 kb on + strand, within GFF4790at 31.928 kb on + strand, within GFF4790at 31.928 kb on + strand, within GFF4790at 31.929 kb on - strand, within GFF4790at 31.929 kb on - strand, within GFF4790at 31.968 kb on + strand, within GFF4790at 31.968 kb on + strand, within GFF4790at 31.968 kb on + strand, within GFF4790at 31.969 kb on - strand, within GFF4790at 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.110 kb on - strandat 32.110 kb on - strandat 32.110 kb on - strandat 32.110 kb on - strandat 32.169 kb on + strandat 32.270 kb on + strandat 32.270 kb on + strandat 32.271 kb on - strandat 32.405 kb on + strand, within GFF4791at 32.406 kb on - strand, within GFF4791at 32.406 kb on - strand, within GFF4791at 32.492 kb on + strand, within GFF4791at 32.493 kb on - strand, within GFF4791at 32.516 kb on - strand, within GFF4791at 32.516 kb on - strand, within GFF4791at 32.555 kb on + strand, within GFF4791at 32.555 kb on + strand, within GFF4791at 32.555 kb on + strand, within GFF4791at 32.556 kb on - strand, within GFF4791at 32.556 kb on - strand, within GFF4791at 32.556 kb on - strand, within GFF4791at 32.556 kb on - strand, within GFF4791at 32.669 kb on + strand, within GFF4791at 32.669 kb on + strand, within GFF4791at 32.670 kb on - strand, within GFF4791at 32.670 kb on - strand, within GFF4791at 32.670 kb on - strand, within GFF4791at 32.670 kb on - strand, within GFF4791at 32.670 kb on - strand, within GFF4791at 32.670 kb on - strand, within GFF4791at 32.726 kb on + strand, within GFF4791at 32.726 kb on + strand, within GFF4791at 32.727 kb on - strand, within GFF4791at 32.747 kb on + strand, within GFF4791at 32.927 kb on + strand, within GFF4791at 32.927 kb on + strand, within GFF4791at 32.927 kb on + strand, within GFF4791at 32.928 kb on - strand, within GFF4791at 32.928 kb on - strand, within GFF4791at 32.928 kb on - strand, within GFF4791at 32.928 kb on - strand, within GFF4791at 32.928 kb on - strand, within GFF4791at 32.928 kb on - strand, within GFF4791at 33.014 kb on + strand, within GFF4791at 33.014 kb on + strand, within GFF4791at 33.015 kb on - strand, within GFF4791at 33.068 kb on + strand, within GFF4791at 33.068 kb on + strand, within GFF4791at 33.069 kb on - strand, within GFF4791at 33.069 kb on - strand, within GFF4791at 33.069 kb on - strand, within GFF4791at 33.074 kb on - strand, within GFF4791at 33.524 kb on + strand, within GFF4791at 33.920 kb on + strandat 33.920 kb on + strandat 33.921 kb on - strandat 33.921 kb on - strandat 33.921 kb on - strandat 33.921 kb on - strandat 33.921 kb on - strandat 34.002 kb on + strandat 34.003 kb on - strandat 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.200 kb on + strand, within GFF4792at 34.201 kb on - strand, within GFF4792at 34.201 kb on - strand, within GFF4792at 34.220 kb on + strand, within GFF4792at 34.220 kb on + strand, within GFF4792at 34.220 kb on + strand, within GFF4792at 34.221 kb on - strand, within GFF4792at 34.504 kb on + strand, within GFF4792at 34.504 kb on + strand, within GFF4792at 34.504 kb on + strand, within GFF4792at 34.504 kb on + strand, within GFF4792at 34.505 kb on + strand, within GFF4792at 34.505 kb on - strand, within GFF4792at 34.505 kb on - strand, within GFF4792at 34.505 kb on - strand, within GFF4792at 34.505 kb on - strand, within GFF4792at 34.538 kb on + strand, within GFF4792at 34.538 kb on + strand, within GFF4792at 34.539 kb on - strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.675 kb on + strandat 34.675 kb on + strandat 34.676 kb on - strandat 34.685 kb on + strandat 34.685 kb on + strandat 34.686 kb on - strandat 34.703 kb on + strandat 34.703 kb on + strandat 34.704 kb on - strandat 34.704 kb on - strandat 34.889 kb on + strand, within GFF4793at 34.898 kb on + strand, within GFF4793

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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31,202 + -0.3
31,203 - +0.3
31,359 + -1.2
31,359 + +0.0
31,360 - -1.7
31,360 - +0.6
31,445 + GFF4790 0.16 -2.3
31,445 + GFF4790 0.16 -0.7
31,446 - GFF4790 0.16 -0.5
31,446 - GFF4790 0.16 -0.5
31,446 - GFF4790 0.16 -2.2
31,446 - GFF4790 0.16 +0.7
31,449 + GFF4790 0.17 -0.3
31,449 + GFF4790 0.17 +0.1
31,450 - GFF4790 0.17 +0.2
31,491 + GFF4790 0.22 -0.6
31,491 + GFF4790 0.22 +0.4
31,546 - GFF4790 0.28 +0.5
31,861 + GFF4790 0.64 -0.1
31,861 + GFF4790 0.64 +0.4
31,862 - GFF4790 0.64 +0.7
31,862 - GFF4790 0.64 -0.2
31,862 - GFF4790 0.64 -0.3
31,862 - GFF4790 0.64 -1.0
31,879 + GFF4790 0.66 -0.4
31,880 - GFF4790 0.66 +1.9
31,880 - GFF4790 0.66 +0.2
31,928 + GFF4790 0.71 -0.3
31,928 + GFF4790 0.71 +0.5
31,928 + GFF4790 0.71 -0.6
31,929 - GFF4790 0.72 -1.3
31,929 - GFF4790 0.72 +0.1
31,968 + GFF4790 0.76 -1.0
31,968 + GFF4790 0.76 -0.8
31,968 + GFF4790 0.76 -0.2
31,969 - GFF4790 0.76 -0.6
32,109 + +0.7
32,109 + -0.2
32,109 + +0.1
32,109 + -1.0
32,109 + -0.7
32,109 + -1.0
32,109 + +0.0
32,109 + -0.3
32,110 - -0.0
32,110 - +0.0
32,110 - -0.6
32,110 - -0.1
32,169 + -0.7
32,270 + -0.5
32,270 + -0.3
32,271 - +1.1
32,405 + GFF4791 0.13 -0.2
32,406 - GFF4791 0.13 +0.0
32,406 - GFF4791 0.13 +0.1
32,492 + GFF4791 0.18 -0.5
32,493 - GFF4791 0.18 +0.1
32,516 - GFF4791 0.19 +0.3
32,516 - GFF4791 0.19 -0.7
32,555 + GFF4791 0.21 +1.4
32,555 + GFF4791 0.21 -0.4
32,555 + GFF4791 0.21 -0.8
32,556 - GFF4791 0.21 +0.7
32,556 - GFF4791 0.21 -0.5
32,556 - GFF4791 0.21 +0.2
32,556 - GFF4791 0.21 -0.3
32,669 + GFF4791 0.27 -0.4
32,669 + GFF4791 0.27 +0.2
32,670 - GFF4791 0.27 -2.1
32,670 - GFF4791 0.27 +0.5
32,670 - GFF4791 0.27 +0.4
32,670 - GFF4791 0.27 -0.0
32,670 - GFF4791 0.27 -0.7
32,670 - GFF4791 0.27 -0.3
32,726 + GFF4791 0.31 +0.3
32,726 + GFF4791 0.31 +1.0
32,727 - GFF4791 0.31 +0.2
32,747 + GFF4791 0.32 -0.8
32,927 + GFF4791 0.42 -0.0
32,927 + GFF4791 0.42 +0.8
32,927 + GFF4791 0.42 -0.1
32,928 - GFF4791 0.42 -1.6
32,928 - GFF4791 0.42 -0.1
32,928 - GFF4791 0.42 +0.5
32,928 - GFF4791 0.42 -0.7
32,928 - GFF4791 0.42 +0.5
32,928 - GFF4791 0.42 -0.9
33,014 + GFF4791 0.46 +0.1
33,014 + GFF4791 0.46 -0.0
33,015 - GFF4791 0.46 -0.3
33,068 + GFF4791 0.49 -0.9
33,068 + GFF4791 0.49 +0.5
33,069 - GFF4791 0.49 +0.1
33,069 - GFF4791 0.49 -0.4
33,069 - GFF4791 0.49 -0.1
33,074 - GFF4791 0.50 -0.4
33,524 + GFF4791 0.75 -0.0
33,920 + +0.5
33,920 + -1.3
33,921 - -0.5
33,921 - -0.6
33,921 - +1.5
33,921 - -0.1
33,921 - +0.7
34,002 + -0.3
34,003 - +0.1
34,134 + GFF4792 0.22 +2.0
34,134 + GFF4792 0.22 -0.3
34,134 + GFF4792 0.22 +0.2
34,134 + GFF4792 0.22 +0.2
34,134 + GFF4792 0.22 +1.8
34,134 + GFF4792 0.22 +0.6
34,134 + GFF4792 0.22 -1.4
34,135 - GFF4792 0.22 +0.7
34,135 - GFF4792 0.22 -0.6
34,135 - GFF4792 0.22 +0.5
34,135 - GFF4792 0.22 -0.8
34,135 - GFF4792 0.22 -1.7
34,135 - GFF4792 0.22 +0.8
34,135 - GFF4792 0.22 -0.7
34,135 - GFF4792 0.22 -0.9
34,200 + GFF4792 0.31 +0.4
34,201 - GFF4792 0.31 -0.4
34,201 - GFF4792 0.31 +0.8
34,220 + GFF4792 0.34 -0.6
34,220 + GFF4792 0.34 -3.4
34,220 + GFF4792 0.34 +0.5
34,221 - GFF4792 0.34 +0.9
34,504 + GFF4792 0.74 -1.3
34,504 + GFF4792 0.74 +0.4
34,504 + GFF4792 0.74 -0.5
34,504 + GFF4792 0.74 +0.8
34,505 + GFF4792 0.74 +0.1
34,505 - GFF4792 0.74 +0.9
34,505 - GFF4792 0.74 +0.5
34,505 - GFF4792 0.74 +0.7
34,505 - GFF4792 0.74 +0.2
34,538 + GFF4792 0.79 +2.1
34,538 + GFF4792 0.79 -0.8
34,539 - GFF4792 0.79 -0.6
34,597 + GFF4792 0.87 +0.3
34,597 + GFF4792 0.87 -0.2
34,597 + GFF4792 0.87 +0.1
34,597 + GFF4792 0.87 -0.9
34,597 + GFF4792 0.87 +0.3
34,597 + GFF4792 0.87 -0.5
34,598 - GFF4792 0.87 +2.7
34,598 - GFF4792 0.87 +0.2
34,598 - GFF4792 0.87 -1.3
34,598 - GFF4792 0.87 +0.3
34,598 - GFF4792 0.87 +0.7
34,675 + -0.6
34,675 + -0.9
34,676 - +1.6
34,685 + -0.2
34,685 + -0.1
34,686 - +0.2
34,703 + -0.3
34,703 + -0.1
34,704 - -0.8
34,704 - +0.3
34,889 + GFF4793 0.28 +0.6
34,898 + GFF4793 0.32 -0.6

Or see this region's nucleotide sequence