Strain Fitness in Xanthobacter sp. DMC5 around GFF4785

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4784 and GFF4785 are separated by 624 nucleotidesGFF4785 and GFF4786 are separated by 211 nucleotides GFF4784 - hypothetical protein, at 24,373 to 24,807 GFF4784 GFF4785 - putative fatty acyl-CoA transferase, at 25,432 to 26,679 GFF4785 GFF4786 - putative acyl-CoA dehydrogenase fadE25, at 26,891 to 28,033 GFF4786 Position (kb) 25 26 27Strain fitness (log2 ratio) -2 -1 0 1 2at 24.489 kb on + strand, within GFF4784at 24.506 kb on - strand, within GFF4784at 24.506 kb on - strand, within GFF4784at 24.506 kb on - strand, within GFF4784at 24.506 kb on - strand, within GFF4784at 24.531 kb on - strand, within GFF4784at 24.531 kb on - strand, within GFF4784at 24.531 kb on - strand, within GFF4784at 24.531 kb on - strand, within GFF4784at 24.588 kb on - strand, within GFF4784at 24.871 kb on + strandat 25.002 kb on + strandat 25.002 kb on + strandat 25.002 kb on + strandat 25.002 kb on + strandat 25.003 kb on - strandat 25.003 kb on - strandat 25.003 kb on - strandat 25.003 kb on - strandat 25.003 kb on - strandat 25.003 kb on - strandat 25.003 kb on - strandat 25.095 kb on + strandat 25.163 kb on + strandat 25.192 kb on + strandat 25.192 kb on + strandat 25.192 kb on + strandat 25.192 kb on + strandat 25.192 kb on + strandat 25.193 kb on - strandat 25.193 kb on - strandat 25.193 kb on - strandat 25.400 kb on + strandat 25.400 kb on + strandat 25.401 kb on - strandat 25.600 kb on + strand, within GFF4785at 25.601 kb on - strand, within GFF4785at 25.601 kb on - strand, within GFF4785at 25.601 kb on - strand, within GFF4785at 25.601 kb on - strand, within GFF4785at 25.601 kb on - strand, within GFF4785at 25.795 kb on + strand, within GFF4785at 25.796 kb on - strand, within GFF4785at 25.824 kb on + strand, within GFF4785at 25.831 kb on + strand, within GFF4785at 25.831 kb on + strand, within GFF4785at 25.831 kb on + strand, within GFF4785at 25.832 kb on - strand, within GFF4785at 25.832 kb on - strand, within GFF4785at 25.832 kb on - strand, within GFF4785at 25.832 kb on - strand, within GFF4785at 26.023 kb on + strand, within GFF4785at 26.023 kb on + strand, within GFF4785at 26.038 kb on - strand, within GFF4785at 26.038 kb on - strand, within GFF4785at 26.150 kb on - strand, within GFF4785at 26.200 kb on + strand, within GFF4785at 26.200 kb on + strand, within GFF4785at 26.201 kb on - strand, within GFF4785at 26.201 kb on - strand, within GFF4785at 26.201 kb on - strand, within GFF4785at 26.201 kb on - strand, within GFF4785at 26.323 kb on - strand, within GFF4785at 26.329 kb on + strand, within GFF4785at 26.330 kb on - strand, within GFF4785at 26.437 kb on + strand, within GFF4785at 26.437 kb on + strand, within GFF4785at 26.437 kb on + strand, within GFF4785at 26.438 kb on - strand, within GFF4785at 26.438 kb on - strand, within GFF4785at 26.438 kb on - strand, within GFF4785at 26.449 kb on + strand, within GFF4785at 26.449 kb on + strand, within GFF4785at 26.449 kb on + strand, within GFF4785at 26.449 kb on + strand, within GFF4785at 26.450 kb on - strand, within GFF4785at 26.661 kb on - strandat 26.746 kb on + strandat 26.746 kb on + strandat 26.746 kb on + strandat 26.746 kb on + strandat 26.746 kb on + strandat 26.746 kb on + strandat 26.747 kb on - strandat 26.747 kb on - strandat 26.747 kb on - strandat 26.747 kb on - strandat 26.782 kb on - strandat 26.782 kb on - strandat 26.825 kb on + strandat 26.825 kb on + strandat 26.825 kb on + strandat 26.825 kb on + strandat 26.825 kb on + strandat 26.825 kb on + strandat 26.825 kb on + strandat 26.826 kb on - strandat 26.826 kb on - strandat 26.826 kb on - strandat 26.826 kb on - strandat 26.826 kb on - strandat 27.000 kb on - strandat 27.066 kb on - strand, within GFF4786at 27.140 kb on + strand, within GFF4786at 27.141 kb on - strand, within GFF4786at 27.141 kb on - strand, within GFF4786at 27.212 kb on + strand, within GFF4786at 27.212 kb on + strand, within GFF4786at 27.212 kb on + strand, within GFF4786at 27.213 kb on - strand, within GFF4786at 27.213 kb on - strand, within GFF4786at 27.480 kb on + strand, within GFF4786at 27.536 kb on + strand, within GFF4786at 27.536 kb on + strand, within GFF4786at 27.536 kb on + strand, within GFF4786at 27.537 kb on - strand, within GFF4786at 27.537 kb on - strand, within GFF4786at 27.537 kb on - strand, within GFF4786at 27.537 kb on - strand, within GFF4786

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
24,489 + GFF4784 0.27 -1.0
24,506 - GFF4784 0.31 +0.6
24,506 - GFF4784 0.31 -0.1
24,506 - GFF4784 0.31 +0.6
24,506 - GFF4784 0.31 -1.0
24,531 - GFF4784 0.36 -0.6
24,531 - GFF4784 0.36 +0.1
24,531 - GFF4784 0.36 -0.5
24,531 - GFF4784 0.36 +0.8
24,588 - GFF4784 0.49 -0.2
24,871 + +1.0
25,002 + +0.7
25,002 + -1.9
25,002 + -1.0
25,002 + -2.0
25,003 - -0.4
25,003 - -1.2
25,003 - -1.3
25,003 - +0.4
25,003 - -0.7
25,003 - -0.5
25,003 - +1.8
25,095 + +0.1
25,163 + +1.1
25,192 + -0.7
25,192 + -0.1
25,192 + +0.1
25,192 + +0.3
25,192 + +0.2
25,193 - +0.1
25,193 - -0.2
25,193 - -0.3
25,400 + -0.2
25,400 + -0.5
25,401 - -0.0
25,600 + GFF4785 0.13 +0.2
25,601 - GFF4785 0.14 +0.0
25,601 - GFF4785 0.14 +0.2
25,601 - GFF4785 0.14 +0.8
25,601 - GFF4785 0.14 +1.1
25,601 - GFF4785 0.14 +0.2
25,795 + GFF4785 0.29 -0.9
25,796 - GFF4785 0.29 +0.5
25,824 + GFF4785 0.31 -0.1
25,831 + GFF4785 0.32 +0.3
25,831 + GFF4785 0.32 +1.1
25,831 + GFF4785 0.32 -0.0
25,832 - GFF4785 0.32 +0.2
25,832 - GFF4785 0.32 -0.3
25,832 - GFF4785 0.32 -0.4
25,832 - GFF4785 0.32 +1.2
26,023 + GFF4785 0.47 -1.5
26,023 + GFF4785 0.47 -1.7
26,038 - GFF4785 0.49 +1.2
26,038 - GFF4785 0.49 +0.5
26,150 - GFF4785 0.58 -0.6
26,200 + GFF4785 0.62 +0.6
26,200 + GFF4785 0.62 -0.6
26,201 - GFF4785 0.62 +0.6
26,201 - GFF4785 0.62 -1.3
26,201 - GFF4785 0.62 +0.5
26,201 - GFF4785 0.62 +0.3
26,323 - GFF4785 0.71 +0.3
26,329 + GFF4785 0.72 +0.5
26,330 - GFF4785 0.72 -0.1
26,437 + GFF4785 0.81 -0.9
26,437 + GFF4785 0.81 -0.3
26,437 + GFF4785 0.81 +0.7
26,438 - GFF4785 0.81 -0.5
26,438 - GFF4785 0.81 -0.7
26,438 - GFF4785 0.81 +0.8
26,449 + GFF4785 0.81 +1.4
26,449 + GFF4785 0.81 +0.4
26,449 + GFF4785 0.81 -0.1
26,449 + GFF4785 0.81 -0.2
26,450 - GFF4785 0.82 +0.5
26,661 - -0.9
26,746 + -0.1
26,746 + -0.7
26,746 + +0.3
26,746 + -0.3
26,746 + +1.2
26,746 + -0.0
26,747 - -1.1
26,747 - -0.4
26,747 - -0.6
26,747 - -0.9
26,782 - +0.1
26,782 - +1.1
26,825 + -0.7
26,825 + -0.3
26,825 + +1.6
26,825 + -0.5
26,825 + -0.7
26,825 + -0.6
26,825 + -0.4
26,826 - +0.1
26,826 - -0.7
26,826 - -1.3
26,826 - +1.4
26,826 - -0.5
27,000 - +0.9
27,066 - GFF4786 0.15 -1.1
27,140 + GFF4786 0.22 +0.9
27,141 - GFF4786 0.22 -0.3
27,141 - GFF4786 0.22 +0.5
27,212 + GFF4786 0.28 -1.0
27,212 + GFF4786 0.28 +0.1
27,212 + GFF4786 0.28 +0.0
27,213 - GFF4786 0.28 -0.2
27,213 - GFF4786 0.28 -1.7
27,480 + GFF4786 0.52 -0.5
27,536 + GFF4786 0.56 +0.2
27,536 + GFF4786 0.56 -0.8
27,536 + GFF4786 0.56 -1.0
27,537 - GFF4786 0.57 +1.1
27,537 - GFF4786 0.57 -1.9
27,537 - GFF4786 0.57 +0.4
27,537 - GFF4786 0.57 +0.4

Or see this region's nucleotide sequence