Strain Fitness in Xanthobacter sp. DMC5 around GFF4784

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4783 and GFF4784 are separated by 161 nucleotidesGFF4784 and GFF4785 are separated by 624 nucleotides GFF4783 - hypothetical protein, at 23,354 to 24,211 GFF4783 GFF4784 - hypothetical protein, at 24,373 to 24,807 GFF4784 GFF4785 - putative fatty acyl-CoA transferase, at 25,432 to 26,679 GFF4785 Position (kb) 24 25Strain fitness (log2 ratio) -2 -1 0 1 2at 23.411 kb on + strandat 23.411 kb on + strandat 23.411 kb on + strandat 23.412 kb on - strandat 23.435 kb on + strandat 23.435 kb on + strandat 23.435 kb on + strandat 23.436 kb on - strandat 23.436 kb on - strandat 23.496 kb on - strand, within GFF4783at 23.578 kb on + strand, within GFF4783at 23.578 kb on + strand, within GFF4783at 23.585 kb on + strand, within GFF4783at 23.585 kb on + strand, within GFF4783at 23.903 kb on + strand, within GFF4783at 23.903 kb on + strand, within GFF4783at 23.903 kb on + strand, within GFF4783at 23.921 kb on + strand, within GFF4783at 23.921 kb on + strand, within GFF4783at 23.922 kb on - strand, within GFF4783at 23.922 kb on - strand, within GFF4783at 23.922 kb on - strand, within GFF4783at 23.922 kb on - strand, within GFF4783at 23.922 kb on - strand, within GFF4783at 23.923 kb on + strand, within GFF4783at 23.977 kb on + strand, within GFF4783at 23.978 kb on - strand, within GFF4783at 23.978 kb on - strand, within GFF4783at 23.978 kb on - strand, within GFF4783at 23.999 kb on + strand, within GFF4783at 23.999 kb on + strand, within GFF4783at 24.000 kb on - strand, within GFF4783at 24.000 kb on - strand, within GFF4783at 24.000 kb on - strand, within GFF4783at 24.000 kb on - strand, within GFF4783at 24.000 kb on - strand, within GFF4783at 24.000 kb on - strand, within GFF4783at 24.000 kb on - strand, within GFF4783at 24.000 kb on - strand, within GFF4783at 24.000 kb on - strand, within GFF4783at 24.042 kb on - strand, within GFF4783at 24.042 kb on - strand, within GFF4783at 24.390 kb on + strandat 24.391 kb on - strandat 24.391 kb on - strandat 24.391 kb on - strandat 24.489 kb on + strand, within GFF4784at 24.506 kb on - strand, within GFF4784at 24.506 kb on - strand, within GFF4784at 24.506 kb on - strand, within GFF4784at 24.506 kb on - strand, within GFF4784at 24.531 kb on - strand, within GFF4784at 24.531 kb on - strand, within GFF4784at 24.531 kb on - strand, within GFF4784at 24.531 kb on - strand, within GFF4784at 24.588 kb on - strand, within GFF4784at 24.871 kb on + strandat 25.002 kb on + strandat 25.002 kb on + strandat 25.002 kb on + strandat 25.002 kb on + strandat 25.003 kb on - strandat 25.003 kb on - strandat 25.003 kb on - strandat 25.003 kb on - strandat 25.003 kb on - strandat 25.003 kb on - strandat 25.003 kb on - strandat 25.095 kb on + strandat 25.163 kb on + strandat 25.192 kb on + strandat 25.192 kb on + strandat 25.192 kb on + strandat 25.192 kb on + strandat 25.192 kb on + strandat 25.193 kb on - strandat 25.193 kb on - strandat 25.193 kb on - strandat 25.400 kb on + strandat 25.400 kb on + strandat 25.401 kb on - strandat 25.600 kb on + strand, within GFF4785at 25.601 kb on - strand, within GFF4785at 25.601 kb on - strand, within GFF4785at 25.601 kb on - strand, within GFF4785at 25.601 kb on - strand, within GFF4785at 25.601 kb on - strand, within GFF4785at 25.795 kb on + strand, within GFF4785at 25.796 kb on - strand, within GFF4785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
23,411 + +0.0
23,411 + -0.5
23,411 + -1.1
23,412 - +1.0
23,435 + -1.6
23,435 + -2.0
23,435 + +1.2
23,436 - -1.8
23,436 - -0.2
23,496 - GFF4783 0.17 -0.3
23,578 + GFF4783 0.26 -1.1
23,578 + GFF4783 0.26 +0.1
23,585 + GFF4783 0.27 -0.2
23,585 + GFF4783 0.27 +0.5
23,903 + GFF4783 0.64 +0.4
23,903 + GFF4783 0.64 +1.1
23,903 + GFF4783 0.64 +1.1
23,921 + GFF4783 0.66 -0.4
23,921 + GFF4783 0.66 -1.0
23,922 - GFF4783 0.66 -0.9
23,922 - GFF4783 0.66 -0.8
23,922 - GFF4783 0.66 +0.3
23,922 - GFF4783 0.66 +0.0
23,922 - GFF4783 0.66 +0.6
23,923 + GFF4783 0.66 -0.8
23,977 + GFF4783 0.73 -1.7
23,978 - GFF4783 0.73 +1.6
23,978 - GFF4783 0.73 -0.1
23,978 - GFF4783 0.73 +1.8
23,999 + GFF4783 0.75 +0.1
23,999 + GFF4783 0.75 -1.2
24,000 - GFF4783 0.75 +0.4
24,000 - GFF4783 0.75 -0.3
24,000 - GFF4783 0.75 +1.6
24,000 - GFF4783 0.75 -0.7
24,000 - GFF4783 0.75 -1.3
24,000 - GFF4783 0.75 +0.3
24,000 - GFF4783 0.75 +0.3
24,000 - GFF4783 0.75 -0.7
24,000 - GFF4783 0.75 +0.5
24,042 - GFF4783 0.80 +0.7
24,042 - GFF4783 0.80 -1.4
24,390 + +1.4
24,391 - -1.4
24,391 - +1.4
24,391 - -0.3
24,489 + GFF4784 0.27 -1.0
24,506 - GFF4784 0.31 +0.6
24,506 - GFF4784 0.31 -0.1
24,506 - GFF4784 0.31 +0.6
24,506 - GFF4784 0.31 -1.0
24,531 - GFF4784 0.36 -0.6
24,531 - GFF4784 0.36 +0.1
24,531 - GFF4784 0.36 -0.5
24,531 - GFF4784 0.36 +0.8
24,588 - GFF4784 0.49 -0.2
24,871 + +1.0
25,002 + +0.7
25,002 + -1.9
25,002 + -1.0
25,002 + -2.0
25,003 - -0.4
25,003 - -1.2
25,003 - -1.3
25,003 - +0.4
25,003 - -0.7
25,003 - -0.5
25,003 - +1.8
25,095 + +0.1
25,163 + +1.1
25,192 + -0.7
25,192 + -0.1
25,192 + +0.1
25,192 + +0.3
25,192 + +0.2
25,193 - +0.1
25,193 - -0.2
25,193 - -0.3
25,400 + -0.2
25,400 + -0.5
25,401 - -0.0
25,600 + GFF4785 0.13 +0.2
25,601 - GFF4785 0.14 +0.0
25,601 - GFF4785 0.14 +0.2
25,601 - GFF4785 0.14 +0.8
25,601 - GFF4785 0.14 +1.1
25,601 - GFF4785 0.14 +0.2
25,795 + GFF4785 0.29 -0.9
25,796 - GFF4785 0.29 +0.5

Or see this region's nucleotide sequence