Strain Fitness in Xanthobacter sp. DMC5 around GFF4764

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4763 and GFF4764 are separated by 230 nucleotidesGFF4764 and GFF4765 are separated by 197 nucleotidesGFF4765 and GFF4766 are separated by 447 nucleotides GFF4763 - hypothetical protein, at 254 to 1,093 GFF4763 GFF4764 - hypothetical protein, at 1,324 to 2,331 GFF4764 GFF4765 - hypothetical protein, at 2,529 to 2,846 GFF4765 GFF4766 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 3,294 to 4,079 GFF4766 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1at 0.343 kb on - strand, within GFF4763at 0.499 kb on - strand, within GFF4763at 0.574 kb on - strand, within GFF4763at 0.682 kb on + strand, within GFF4763at 0.713 kb on + strand, within GFF4763at 0.721 kb on + strand, within GFF4763at 0.722 kb on - strand, within GFF4763at 0.723 kb on + strand, within GFF4763at 0.724 kb on - strand, within GFF4763at 0.873 kb on + strand, within GFF4763at 0.874 kb on - strand, within GFF4763at 0.874 kb on - strand, within GFF4763at 0.874 kb on - strand, within GFF4763at 0.904 kb on - strand, within GFF4763at 0.904 kb on - strand, within GFF4763at 0.954 kb on + strand, within GFF4763at 0.955 kb on - strand, within GFF4763at 0.955 kb on - strand, within GFF4763at 0.958 kb on + strand, within GFF4763at 0.958 kb on + strand, within GFF4763at 0.958 kb on + strand, within GFF4763at 0.958 kb on + strand, within GFF4763at 0.958 kb on + strand, within GFF4763at 1.180 kb on + strandat 1.283 kb on - strandat 1.430 kb on + strand, within GFF4764at 1.431 kb on - strand, within GFF4764at 1.514 kb on + strand, within GFF4764at 1.569 kb on - strand, within GFF4764at 1.602 kb on + strand, within GFF4764at 1.602 kb on + strand, within GFF4764at 1.602 kb on + strand, within GFF4764at 1.602 kb on + strand, within GFF4764at 1.603 kb on - strand, within GFF4764at 1.603 kb on - strand, within GFF4764at 1.603 kb on - strand, within GFF4764at 1.603 kb on - strand, within GFF4764at 1.689 kb on + strand, within GFF4764at 1.689 kb on + strand, within GFF4764at 1.689 kb on + strand, within GFF4764at 1.690 kb on - strand, within GFF4764at 1.690 kb on - strand, within GFF4764at 1.751 kb on + strand, within GFF4764at 1.752 kb on - strand, within GFF4764at 1.752 kb on - strand, within GFF4764at 1.847 kb on + strand, within GFF4764at 1.880 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.961 kb on - strand, within GFF4764at 1.961 kb on - strand, within GFF4764at 2.083 kb on + strand, within GFF4764at 2.150 kb on + strand, within GFF4764at 2.151 kb on - strand, within GFF4764at 2.151 kb on - strand, within GFF4764at 2.565 kb on + strand, within GFF4765at 2.565 kb on + strand, within GFF4765at 2.565 kb on + strand, within GFF4765at 2.566 kb on - strand, within GFF4765at 2.566 kb on - strand, within GFF4765at 2.566 kb on - strand, within GFF4765at 2.566 kb on - strand, within GFF4765at 2.566 kb on - strand, within GFF4765at 2.567 kb on + strand, within GFF4765at 2.567 kb on + strand, within GFF4765at 2.567 kb on + strand, within GFF4765at 2.568 kb on - strand, within GFF4765at 2.568 kb on - strand, within GFF4765at 2.742 kb on + strand, within GFF4765at 2.743 kb on - strand, within GFF4765at 2.982 kb on + strandat 2.982 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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343 - GFF4763 0.11 +0.2
499 - GFF4763 0.29 -0.1
574 - GFF4763 0.38 +0.4
682 + GFF4763 0.51 -0.1
713 + GFF4763 0.55 -0.3
721 + GFF4763 0.56 -0.3
722 - GFF4763 0.56 -0.6
723 + GFF4763 0.56 +0.3
724 - GFF4763 0.56 -0.5
873 + GFF4763 0.74 -0.9
874 - GFF4763 0.74 +0.1
874 - GFF4763 0.74 +0.5
874 - GFF4763 0.74 -0.1
904 - GFF4763 0.77 -1.3
904 - GFF4763 0.77 +0.1
954 + GFF4763 0.83 -0.5
955 - GFF4763 0.83 -0.8
955 - GFF4763 0.83 -0.5
958 + GFF4763 0.84 -1.2
958 + GFF4763 0.84 -0.3
958 + GFF4763 0.84 -0.5
958 + GFF4763 0.84 -0.5
958 + GFF4763 0.84 +1.7
1,180 + -0.2
1,283 - -1.1
1,430 + GFF4764 0.11 +0.1
1,431 - GFF4764 0.11 +1.1
1,514 + GFF4764 0.19 -0.5
1,569 - GFF4764 0.24 -0.3
1,602 + GFF4764 0.28 -0.0
1,602 + GFF4764 0.28 +0.1
1,602 + GFF4764 0.28 +0.1
1,602 + GFF4764 0.28 +0.7
1,603 - GFF4764 0.28 +0.1
1,603 - GFF4764 0.28 -0.2
1,603 - GFF4764 0.28 +0.6
1,603 - GFF4764 0.28 -0.3
1,689 + GFF4764 0.36 +1.0
1,689 + GFF4764 0.36 +1.6
1,689 + GFF4764 0.36 -1.3
1,690 - GFF4764 0.36 -0.3
1,690 - GFF4764 0.36 -0.1
1,751 + GFF4764 0.42 +0.3
1,752 - GFF4764 0.42 +1.1
1,752 - GFF4764 0.42 +0.0
1,847 + GFF4764 0.52 -0.6
1,880 + GFF4764 0.55 -0.3
1,960 + GFF4764 0.63 +0.3
1,960 + GFF4764 0.63 +0.3
1,960 + GFF4764 0.63 -1.5
1,960 + GFF4764 0.63 -0.3
1,960 + GFF4764 0.63 +0.1
1,961 - GFF4764 0.63 -1.2
1,961 - GFF4764 0.63 -0.8
2,083 + GFF4764 0.75 +0.2
2,150 + GFF4764 0.82 +1.1
2,151 - GFF4764 0.82 -0.5
2,151 - GFF4764 0.82 -0.3
2,565 + GFF4765 0.11 -0.4
2,565 + GFF4765 0.11 -0.8
2,565 + GFF4765 0.11 -1.0
2,566 - GFF4765 0.12 +0.5
2,566 - GFF4765 0.12 -0.0
2,566 - GFF4765 0.12 -0.4
2,566 - GFF4765 0.12 +0.1
2,566 - GFF4765 0.12 -0.6
2,567 + GFF4765 0.12 +0.1
2,567 + GFF4765 0.12 -0.1
2,567 + GFF4765 0.12 +0.3
2,568 - GFF4765 0.12 -0.3
2,568 - GFF4765 0.12 -1.0
2,742 + GFF4765 0.67 +0.5
2,743 - GFF4765 0.67 +0.7
2,982 + +0.5
2,982 + -2.0

Or see this region's nucleotide sequence