Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4745 and GFF4746 are separated by 59 nucleotides GFF4746 and GFF4747 overlap by 7 nucleotides
GFF4745 - hypothetical protein, at 160,230 to 161,348
GFF4745
GFF4746 - Aliphatic sulfonates import ATP-binding protein SsuB, at 161,408 to 162,217
GFF4746
GFF4747 - hypothetical protein, at 162,211 to 163,230
GFF4747
Position (kb) 161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 160.576 kb on + strand, within GFF4745 at 160.577 kb on - strand, within GFF4745 at 160.714 kb on + strand, within GFF4745 at 160.715 kb on - strand, within GFF4745 at 160.765 kb on + strand, within GFF4745 at 160.765 kb on + strand, within GFF4745 at 160.766 kb on - strand, within GFF4745 at 161.491 kb on - strand, within GFF4746 at 161.772 kb on + strand, within GFF4746 at 161.898 kb on + strand, within GFF4746 at 161.899 kb on - strand, within GFF4746 at 162.317 kb on + strand, within GFF4747 at 162.317 kb on + strand, within GFF4747 at 162.317 kb on + strand, within GFF4747 at 162.318 kb on - strand, within GFF4747 at 162.318 kb on - strand, within GFF4747 at 162.318 kb on - strand, within GFF4747 at 162.318 kb on - strand, within GFF4747 at 162.318 kb on - strand, within GFF4747 at 162.329 kb on + strand, within GFF4747 at 162.329 kb on + strand, within GFF4747 at 162.330 kb on - strand, within GFF4747 at 162.330 kb on - strand, within GFF4747 at 162.359 kb on + strand, within GFF4747 at 162.527 kb on + strand, within GFF4747 at 162.527 kb on + strand, within GFF4747 at 162.531 kb on - strand, within GFF4747 at 163.098 kb on - strand, within GFF4747
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 160,576 + GFF4745 0.31 +0.2 160,577 - GFF4745 0.31 +0.6 160,714 + GFF4745 0.43 -2.8 160,715 - GFF4745 0.43 -0.5 160,765 + GFF4745 0.48 -0.4 160,765 + GFF4745 0.48 -0.0 160,766 - GFF4745 0.48 +0.1 161,491 - GFF4746 0.10 +0.4 161,772 + GFF4746 0.45 +0.1 161,898 + GFF4746 0.60 -0.3 161,899 - GFF4746 0.61 +1.1 162,317 + GFF4747 0.10 -1.3 162,317 + GFF4747 0.10 +0.7 162,317 + GFF4747 0.10 +0.6 162,318 - GFF4747 0.10 -0.4 162,318 - GFF4747 0.10 +0.0 162,318 - GFF4747 0.10 +1.1 162,318 - GFF4747 0.10 -1.0 162,318 - GFF4747 0.10 -0.4 162,329 + GFF4747 0.12 -0.4 162,329 + GFF4747 0.12 -2.0 162,330 - GFF4747 0.12 +0.7 162,330 - GFF4747 0.12 -0.4 162,359 + GFF4747 0.15 +0.5 162,527 + GFF4747 0.31 -0.3 162,527 + GFF4747 0.31 -1.3 162,531 - GFF4747 0.31 -0.3 163,098 - GFF4747 0.87 +0.4
Or see this region's nucleotide sequence