Strain Fitness in Xanthobacter sp. DMC5 around GFF4737

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4735 and GFF4736 are separated by 5 nucleotidesGFF4736 and GFF4737 are separated by 11 nucleotidesGFF4737 and GFF4738 overlap by 1 nucleotides GFF4735 - Chaperone SurA, at 145,727 to 146,569 GFF4735 GFF4736 - Respiratory nitrate reductase 1 gamma chain, at 146,575 to 147,348 GFF4736 GFF4737 - Nitrate reductase molybdenum cofactor assembly chaperone NarJ, at 147,360 to 148,082 GFF4737 GFF4738 - Respiratory nitrate reductase 1 beta chain, at 148,082 to 149,617 GFF4738 Position (kb) 147 148 149Strain fitness (log2 ratio) -2 -1 0 1 2 3at 146.687 kb on + strand, within GFF4736at 146.725 kb on + strand, within GFF4736at 146.725 kb on + strand, within GFF4736at 146.725 kb on + strand, within GFF4736at 146.725 kb on + strand, within GFF4736at 146.725 kb on + strand, within GFF4736at 146.726 kb on - strand, within GFF4736at 146.726 kb on - strand, within GFF4736at 146.726 kb on - strand, within GFF4736at 146.726 kb on - strand, within GFF4736at 146.773 kb on + strand, within GFF4736at 146.816 kb on + strand, within GFF4736at 146.817 kb on - strand, within GFF4736at 146.817 kb on - strand, within GFF4736at 146.817 kb on - strand, within GFF4736at 147.248 kb on + strand, within GFF4736at 147.248 kb on + strand, within GFF4736at 147.248 kb on + strand, within GFF4736at 147.249 kb on - strand, within GFF4736at 147.249 kb on - strand, within GFF4736at 147.613 kb on + strand, within GFF4737at 147.613 kb on + strand, within GFF4737at 147.889 kb on + strand, within GFF4737at 147.889 kb on + strand, within GFF4737at 147.889 kb on + strand, within GFF4737at 147.889 kb on + strand, within GFF4737at 147.890 kb on - strand, within GFF4737at 147.890 kb on - strand, within GFF4737at 147.890 kb on - strand, within GFF4737at 147.907 kb on + strand, within GFF4737at 148.266 kb on + strand, within GFF4738at 148.290 kb on + strand, within GFF4738at 148.290 kb on + strand, within GFF4738at 148.290 kb on + strand, within GFF4738at 148.290 kb on + strand, within GFF4738at 148.291 kb on - strand, within GFF4738at 148.377 kb on + strand, within GFF4738at 148.377 kb on + strand, within GFF4738at 148.378 kb on - strand, within GFF4738at 148.378 kb on - strand, within GFF4738at 148.378 kb on - strand, within GFF4738at 148.378 kb on - strand, within GFF4738at 148.378 kb on - strand, within GFF4738at 148.378 kb on - strand, within GFF4738at 148.455 kb on + strand, within GFF4738at 148.557 kb on + strand, within GFF4738at 148.557 kb on + strand, within GFF4738at 148.557 kb on + strand, within GFF4738at 148.557 kb on + strand, within GFF4738at 148.557 kb on + strand, within GFF4738at 148.582 kb on - strand, within GFF4738at 148.744 kb on - strand, within GFF4738at 148.797 kb on + strand, within GFF4738at 148.798 kb on - strand, within GFF4738at 148.798 kb on - strand, within GFF4738at 148.815 kb on + strand, within GFF4738at 148.816 kb on - strand, within GFF4738at 148.923 kb on + strand, within GFF4738at 148.924 kb on - strand, within GFF4738at 148.935 kb on + strand, within GFF4738at 148.935 kb on + strand, within GFF4738at 148.935 kb on + strand, within GFF4738at 149.016 kb on + strand, within GFF4738at 149.017 kb on - strand, within GFF4738at 149.017 kb on - strand, within GFF4738at 149.017 kb on - strand, within GFF4738at 149.017 kb on - strand, within GFF4738

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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146,687 + GFF4736 0.14 -0.5
146,725 + GFF4736 0.19 +0.1
146,725 + GFF4736 0.19 -0.5
146,725 + GFF4736 0.19 -1.9
146,725 + GFF4736 0.19 +0.1
146,725 + GFF4736 0.19 -0.2
146,726 - GFF4736 0.20 +0.1
146,726 - GFF4736 0.20 -0.4
146,726 - GFF4736 0.20 +0.7
146,726 - GFF4736 0.20 -1.2
146,773 + GFF4736 0.26 +0.4
146,816 + GFF4736 0.31 +0.6
146,817 - GFF4736 0.31 -2.5
146,817 - GFF4736 0.31 -1.6
146,817 - GFF4736 0.31 -0.3
147,248 + GFF4736 0.87 +0.5
147,248 + GFF4736 0.87 +0.2
147,248 + GFF4736 0.87 +0.5
147,249 - GFF4736 0.87 -0.6
147,249 - GFF4736 0.87 +0.1
147,613 + GFF4737 0.35 -0.1
147,613 + GFF4737 0.35 +0.5
147,889 + GFF4737 0.73 +0.2
147,889 + GFF4737 0.73 +0.7
147,889 + GFF4737 0.73 +0.7
147,889 + GFF4737 0.73 -0.8
147,890 - GFF4737 0.73 -1.5
147,890 - GFF4737 0.73 -0.3
147,890 - GFF4737 0.73 +0.3
147,907 + GFF4737 0.76 -2.2
148,266 + GFF4738 0.12 -1.1
148,290 + GFF4738 0.14 -0.4
148,290 + GFF4738 0.14 -1.5
148,290 + GFF4738 0.14 +0.0
148,290 + GFF4738 0.14 +0.2
148,291 - GFF4738 0.14 +1.2
148,377 + GFF4738 0.19 -0.3
148,377 + GFF4738 0.19 -0.3
148,378 - GFF4738 0.19 +0.1
148,378 - GFF4738 0.19 +0.1
148,378 - GFF4738 0.19 -1.0
148,378 - GFF4738 0.19 -0.3
148,378 - GFF4738 0.19 -0.1
148,378 - GFF4738 0.19 -1.3
148,455 + GFF4738 0.24 -0.3
148,557 + GFF4738 0.31 -0.5
148,557 + GFF4738 0.31 -0.4
148,557 + GFF4738 0.31 -0.8
148,557 + GFF4738 0.31 +1.8
148,557 + GFF4738 0.31 +2.8
148,582 - GFF4738 0.33 -0.7
148,744 - GFF4738 0.43 +0.4
148,797 + GFF4738 0.47 +0.4
148,798 - GFF4738 0.47 +0.6
148,798 - GFF4738 0.47 +0.6
148,815 + GFF4738 0.48 -0.2
148,816 - GFF4738 0.48 +0.6
148,923 + GFF4738 0.55 +0.9
148,924 - GFF4738 0.55 +0.6
148,935 + GFF4738 0.56 -1.5
148,935 + GFF4738 0.56 -1.9
148,935 + GFF4738 0.56 +0.3
149,016 + GFF4738 0.61 +0.4
149,017 - GFF4738 0.61 +0.2
149,017 - GFF4738 0.61 +1.3
149,017 - GFF4738 0.61 +0.1
149,017 - GFF4738 0.61 +0.1

Or see this region's nucleotide sequence