Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4710 and GFF4711 are separated by 565 nucleotides GFF4711 and GFF4712 overlap by 22 nucleotides GFF4712 and GFF4713 are separated by 27 nucleotides
GFF4710 - Sodium/glutamate symporter, at 122,979 to 124,187
GFF4710
GFF4711 - Flavodoxin B, at 124,753 to 125,235
GFF4711
GFF4712 - hypothetical protein, at 125,214 to 125,672
GFF4712
GFF4713 - hypothetical protein, at 125,700 to 126,059
GFF4713
Position (kb) 124
125
126 Strain fitness (log2 ratio) -2
-1
0
1 at 123.958 kb on - strand, within GFF4710 at 123.958 kb on - strand, within GFF4710 at 123.958 kb on - strand, within GFF4710 at 123.958 kb on - strand, within GFF4710 at 123.996 kb on + strand, within GFF4710 at 124.414 kb on - strand at 124.762 kb on - strand at 124.909 kb on + strand, within GFF4711 at 124.947 kb on + strand, within GFF4711 at 124.948 kb on - strand, within GFF4711 at 125.056 kb on + strand, within GFF4711 at 125.057 kb on - strand, within GFF4711 at 125.113 kb on + strand, within GFF4711 at 125.119 kb on + strand, within GFF4711 at 125.120 kb on - strand, within GFF4711 at 125.120 kb on - strand, within GFF4711 at 125.120 kb on - strand, within GFF4711 at 125.349 kb on + strand, within GFF4712 at 125.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 123,958 - GFF4710 0.81 +0.9 123,958 - GFF4710 0.81 -0.9 123,958 - GFF4710 0.81 +0.2 123,958 - GFF4710 0.81 +0.4 123,996 + GFF4710 0.84 -1.9 124,414 - -0.0 124,762 - +0.4 124,909 + GFF4711 0.32 +1.1 124,947 + GFF4711 0.40 +0.1 124,948 - GFF4711 0.40 +0.3 125,056 + GFF4711 0.63 -0.6 125,057 - GFF4711 0.63 +0.5 125,113 + GFF4711 0.75 -0.9 125,119 + GFF4711 0.76 -0.5 125,120 - GFF4711 0.76 +0.1 125,120 - GFF4711 0.76 -1.8 125,120 - GFF4711 0.76 +1.1 125,349 + GFF4712 0.29 -0.4 125,671 - -0.0
Or see this region's nucleotide sequence