Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF465 and GFF466 are separated by 0 nucleotides GFF466 and GFF467 are separated by 15 nucleotides GFF467 and GFF468 overlap by 8 nucleotides GFF468 and GFF469 overlap by 4 nucleotides
GFF465 - Putative aminoacrylate peracid reductase RutC, at 492,496 to 492,888
GFF465
GFF466 - hypothetical protein, at 492,889 to 493,734
GFF466
GFF467 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 493,750 to 494,463
GFF467
GFF468 - Lipopolysaccharide export system ATP-binding protein LptB, at 494,456 to 495,247
GFF468
GFF469 - hypothetical protein, at 495,244 to 496,245
GFF469
Position (kb) 493
494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 492.794 kb on + strand, within GFF465 at 492.795 kb on - strand, within GFF465 at 493.221 kb on - strand, within GFF466 at 493.405 kb on + strand, within GFF466 at 493.405 kb on + strand, within GFF466 at 493.405 kb on + strand, within GFF466 at 493.405 kb on + strand, within GFF466 at 493.406 kb on - strand, within GFF466 at 493.406 kb on - strand, within GFF466 at 493.425 kb on - strand, within GFF466 at 493.425 kb on - strand, within GFF466 at 493.509 kb on - strand, within GFF466 at 493.655 kb on + strand at 493.656 kb on - strand at 493.656 kb on - strand at 493.656 kb on - strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.695 kb on - strand at 493.725 kb on + strand at 493.726 kb on - strand at 493.842 kb on - strand, within GFF467 at 493.842 kb on - strand, within GFF467 at 494.484 kb on + strand at 494.552 kb on - strand, within GFF468 at 495.047 kb on + strand, within GFF468 at 495.395 kb on + strand, within GFF469 at 495.422 kb on + strand, within GFF469 at 495.422 kb on + strand, within GFF469 at 495.422 kb on + strand, within GFF469 at 495.423 kb on - strand, within GFF469
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 492,794 + GFF465 0.76 -0.2 492,795 - GFF465 0.76 -3.0 493,221 - GFF466 0.39 -0.3 493,405 + GFF466 0.61 +0.5 493,405 + GFF466 0.61 -0.6 493,405 + GFF466 0.61 -0.1 493,405 + GFF466 0.61 -0.0 493,406 - GFF466 0.61 +0.2 493,406 - GFF466 0.61 -0.3 493,425 - GFF466 0.63 -0.2 493,425 - GFF466 0.63 +0.7 493,509 - GFF466 0.73 -1.6 493,655 + +0.2 493,656 - +1.0 493,656 - -0.1 493,656 - -0.9 493,694 + -0.1 493,694 + +1.6 493,695 - -0.3 493,725 + +1.1 493,726 - +0.7 493,842 - GFF467 0.13 -1.2 493,842 - GFF467 0.13 -1.1 494,484 + -0.5 494,552 - GFF468 0.12 +1.1 495,047 + GFF468 0.75 -1.5 495,395 + GFF469 0.15 +0.2 495,422 + GFF469 0.18 +0.2 495,422 + GFF469 0.18 -0.4 495,422 + GFF469 0.18 +0.4 495,423 - GFF469 0.18 -0.4
Or see this region's nucleotide sequence