Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4663 and GFF4664 are separated by 261 nucleotides GFF4664 and GFF4665 are separated by 199 nucleotides GFF4665 and GFF4666 overlap by 17 nucleotides
GFF4663 - Aspartate/prephenate aminotransferase, at 70,549 to 71,751
GFF4663
GFF4664 - Disulfide-bond oxidoreductase YfcG, at 72,013 to 72,651
GFF4664
GFF4665 - hypothetical protein, at 72,851 to 73,234
GFF4665
GFF4666 - Aldose sugar dehydrogenase YliI, at 73,218 to 74,456
GFF4666
Position (kb) 72
73 Strain fitness (log2 ratio) -1
0
1 at 71.857 kb on - strand at 72.025 kb on + strand at 72.026 kb on - strand at 72.026 kb on - strand at 72.052 kb on + strand at 72.226 kb on + strand, within GFF4664 at 72.226 kb on + strand, within GFF4664 at 72.226 kb on + strand, within GFF4664 at 72.227 kb on - strand, within GFF4664 at 72.227 kb on - strand, within GFF4664 at 72.413 kb on - strand, within GFF4664 at 72.737 kb on - strand at 72.894 kb on - strand, within GFF4665 at 73.250 kb on + strand at 73.251 kb on - strand at 73.251 kb on - strand at 73.356 kb on - strand, within GFF4666 at 73.356 kb on - strand, within GFF4666 at 73.356 kb on - strand, within GFF4666 at 73.384 kb on - strand, within GFF4666
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 71,857 - -0.3 72,025 + -1.3 72,026 - -1.0 72,026 - +0.3 72,052 + -1.6 72,226 + GFF4664 0.33 -0.8 72,226 + GFF4664 0.33 +0.4 72,226 + GFF4664 0.33 -0.2 72,227 - GFF4664 0.33 -0.9 72,227 - GFF4664 0.33 +0.8 72,413 - GFF4664 0.63 +1.1 72,737 - +0.7 72,894 - GFF4665 0.11 +1.1 73,250 + +0.3 73,251 - -0.5 73,251 - +0.5 73,356 - GFF4666 0.11 +0.5 73,356 - GFF4666 0.11 -0.8 73,356 - GFF4666 0.11 -0.5 73,384 - GFF4666 0.13 +0.8
Or see this region's nucleotide sequence