Strain Fitness in Xanthobacter sp. DMC5 around GFF4591

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4590 and GFF4591 are separated by 96 nucleotidesGFF4591 and GFF4592 are separated by 124 nucleotidesGFF4592 and GFF4593 are separated by 13 nucleotides GFF4590 - HTH-type transcriptional regulator HdfR, at 168 to 1,025 GFF4590 GFF4591 - hypothetical protein, at 1,122 to 1,502 GFF4591 GFF4592 - hypothetical protein, at 1,627 to 1,962 GFF4592 GFF4593 - Cyanuric acid amidohydrolase, at 1,976 to 3,070 GFF4593 Position (kb) 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.333 kb on + strand, within GFF4590at 0.333 kb on + strand, within GFF4590at 0.334 kb on - strand, within GFF4590at 0.359 kb on + strand, within GFF4590at 0.360 kb on - strand, within GFF4590at 0.360 kb on - strand, within GFF4590at 0.850 kb on + strand, within GFF4590at 0.978 kb on - strandat 0.978 kb on - strandat 0.978 kb on - strandat 1.008 kb on + strandat 1.008 kb on + strandat 1.009 kb on - strandat 1.009 kb on - strandat 1.085 kb on + strandat 1.086 kb on - strandat 1.167 kb on + strand, within GFF4591at 1.168 kb on - strand, within GFF4591at 1.188 kb on - strand, within GFF4591at 1.242 kb on - strand, within GFF4591at 1.290 kb on + strand, within GFF4591at 1.291 kb on - strand, within GFF4591at 1.291 kb on - strand, within GFF4591at 1.291 kb on - strand, within GFF4591at 1.292 kb on + strand, within GFF4591at 1.371 kb on + strand, within GFF4591at 1.395 kb on + strand, within GFF4591at 1.395 kb on + strand, within GFF4591at 1.396 kb on - strand, within GFF4591at 1.438 kb on + strand, within GFF4591at 1.439 kb on - strand, within GFF4591at 1.445 kb on + strand, within GFF4591at 1.598 kb on + strandat 1.630 kb on + strandat 1.663 kb on + strand, within GFF4592at 1.664 kb on - strand, within GFF4592at 1.665 kb on + strand, within GFF4592at 1.666 kb on - strand, within GFF4592at 1.666 kb on - strand, within GFF4592at 1.666 kb on - strand, within GFF4592at 1.666 kb on - strand, within GFF4592at 1.693 kb on + strand, within GFF4592at 1.693 kb on + strand, within GFF4592at 2.079 kb on + strandat 2.079 kb on + strandat 2.079 kb on + strandat 2.079 kb on + strandat 2.079 kb on + strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.090 kb on - strand, within GFF4593at 2.152 kb on + strand, within GFF4593at 2.152 kb on + strand, within GFF4593at 2.152 kb on + strand, within GFF4593at 2.152 kb on + strand, within GFF4593at 2.152 kb on + strand, within GFF4593at 2.152 kb on + strand, within GFF4593at 2.153 kb on - strand, within GFF4593at 2.173 kb on + strand, within GFF4593at 2.174 kb on - strand, within GFF4593

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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333 + GFF4590 0.19 -0.7
333 + GFF4590 0.19 -1.1
334 - GFF4590 0.19 -0.3
359 + GFF4590 0.22 +0.6
360 - GFF4590 0.22 -0.3
360 - GFF4590 0.22 +0.8
850 + GFF4590 0.79 -2.3
978 - -0.9
978 - -0.8
978 - +0.0
1,008 + -0.8
1,008 + -0.2
1,009 - -0.4
1,009 - +0.8
1,085 + +0.6
1,086 - +0.7
1,167 + GFF4591 0.12 +0.4
1,168 - GFF4591 0.12 -0.1
1,188 - GFF4591 0.17 +0.5
1,242 - GFF4591 0.31 +0.7
1,290 + GFF4591 0.44 +0.1
1,291 - GFF4591 0.44 +0.6
1,291 - GFF4591 0.44 -0.3
1,291 - GFF4591 0.44 -1.5
1,292 + GFF4591 0.45 +1.0
1,371 + GFF4591 0.65 +0.6
1,395 + GFF4591 0.72 -0.0
1,395 + GFF4591 0.72 +0.1
1,396 - GFF4591 0.72 -0.9
1,438 + GFF4591 0.83 -0.8
1,439 - GFF4591 0.83 +0.0
1,445 + GFF4591 0.85 +0.1
1,598 + -0.2
1,630 + +0.5
1,663 + GFF4592 0.11 -1.0
1,664 - GFF4592 0.11 +0.2
1,665 + GFF4592 0.11 +0.1
1,666 - GFF4592 0.12 -1.4
1,666 - GFF4592 0.12 +0.2
1,666 - GFF4592 0.12 -0.6
1,666 - GFF4592 0.12 +0.5
1,693 + GFF4592 0.20 -0.7
1,693 + GFF4592 0.20 -0.6
2,079 + -1.3
2,079 + -0.4
2,079 + -0.5
2,079 + -0.1
2,079 + -0.6
2,080 - -0.1
2,080 - -0.1
2,080 - -2.8
2,080 - -0.4
2,080 - -1.1
2,080 - -0.3
2,080 - +0.5
2,080 - +0.6
2,080 - -0.2
2,080 - -0.4
2,080 - +0.8
2,090 - GFF4593 0.10 -1.0
2,152 + GFF4593 0.16 -0.6
2,152 + GFF4593 0.16 +0.3
2,152 + GFF4593 0.16 +0.7
2,152 + GFF4593 0.16 +0.7
2,152 + GFF4593 0.16 +0.3
2,152 + GFF4593 0.16 +1.1
2,153 - GFF4593 0.16 -1.3
2,173 + GFF4593 0.18 +0.8
2,174 - GFF4593 0.18 -0.7

Or see this region's nucleotide sequence