Strain Fitness in Xanthobacter sp. DMC5 around GFF4586

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4584 and GFF4585 are separated by 287 nucleotidesGFF4585 and GFF4586 are separated by 240 nucleotidesGFF4586 and GFF4587 are separated by 65 nucleotidesGFF4587 and GFF4588 overlap by 1 nucleotides GFF4584 - Nif-specific regulatory protein, at 172,568 to 174,346 GFF4584 GFF4585 - Ferredoxin-1, at 174,634 to 174,828 GFF4585 GFF4586 - FeS cluster assembly protein SufB, at 175,069 to 176,553 GFF4586 GFF4587 - putative ATP-dependent transporter SufC, at 176,619 to 177,380 GFF4587 GFF4588 - FeS cluster assembly protein SufD, at 177,380 to 178,723 GFF4588 Position (kb) 175 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 174.147 kb on + strand, within GFF4584at 174.147 kb on + strand, within GFF4584at 174.305 kb on + strandat 174.540 kb on + strandat 174.628 kb on + strandat 174.629 kb on - strandat 174.640 kb on + strandat 174.641 kb on - strandat 174.641 kb on - strandat 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.731 kb on + strand, within GFF4585at 174.732 kb on - strand, within GFF4585at 174.732 kb on - strand, within GFF4585at 174.810 kb on + strandat 174.811 kb on - strandat 174.811 kb on - strandat 174.982 kb on + strandat 174.982 kb on + strandat 175.079 kb on + strandat 175.079 kb on + strandat 175.080 kb on - strandat 175.123 kb on + strandat 175.124 kb on - strandat 175.124 kb on - strandat 175.124 kb on - strandat 175.129 kb on + strandat 175.252 kb on + strand, within GFF4586at 175.252 kb on + strand, within GFF4586at 175.252 kb on + strand, within GFF4586at 175.253 kb on - strand, within GFF4586at 175.253 kb on - strand, within GFF4586at 175.327 kb on + strand, within GFF4586at 175.328 kb on - strand, within GFF4586at 175.420 kb on - strand, within GFF4586at 175.559 kb on - strand, within GFF4586at 175.642 kb on + strand, within GFF4586at 175.690 kb on + strand, within GFF4586at 175.691 kb on - strand, within GFF4586at 175.693 kb on - strand, within GFF4586at 175.732 kb on + strand, within GFF4586at 175.732 kb on + strand, within GFF4586at 175.733 kb on - strand, within GFF4586at 175.756 kb on - strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.802 kb on - strand, within GFF4586at 175.802 kb on - strand, within GFF4586at 175.802 kb on - strand, within GFF4586at 175.802 kb on - strand, within GFF4586at 175.802 kb on - strand, within GFF4586at 175.810 kb on + strand, within GFF4586at 175.904 kb on - strand, within GFF4586at 175.925 kb on - strand, within GFF4586at 175.957 kb on + strand, within GFF4586at 175.957 kb on + strand, within GFF4586at 175.957 kb on + strand, within GFF4586at 175.957 kb on + strand, within GFF4586at 176.095 kb on + strand, within GFF4586at 176.095 kb on + strand, within GFF4586at 176.095 kb on + strand, within GFF4586at 176.095 kb on + strand, within GFF4586at 176.221 kb on + strand, within GFF4586at 176.222 kb on - strand, within GFF4586at 176.222 kb on - strand, within GFF4586at 176.326 kb on + strand, within GFF4586at 176.326 kb on + strand, within GFF4586at 176.326 kb on + strand, within GFF4586at 176.326 kb on + strand, within GFF4586at 176.326 kb on + strand, within GFF4586at 176.327 kb on - strand, within GFF4586at 176.327 kb on - strand, within GFF4586at 176.327 kb on - strand, within GFF4586at 176.328 kb on + strand, within GFF4586at 176.329 kb on - strand, within GFF4586at 176.404 kb on + strand, within GFF4586at 176.405 kb on - strandat 176.405 kb on - strandat 176.601 kb on - strandat 176.601 kb on - strandat 176.763 kb on + strand, within GFF4587at 176.763 kb on + strand, within GFF4587at 176.764 kb on - strand, within GFF4587at 176.764 kb on - strand, within GFF4587at 176.787 kb on + strand, within GFF4587at 176.942 kb on + strand, within GFF4587at 176.942 kb on + strand, within GFF4587at 176.943 kb on - strand, within GFF4587at 176.943 kb on - strand, within GFF4587at 176.943 kb on - strand, within GFF4587at 176.943 kb on - strand, within GFF4587at 177.123 kb on + strand, within GFF4587at 177.123 kb on + strand, within GFF4587at 177.123 kb on + strand, within GFF4587at 177.124 kb on - strand, within GFF4587at 177.124 kb on - strand, within GFF4587at 177.240 kb on + strand, within GFF4587at 177.241 kb on - strand, within GFF4587at 177.241 kb on - strand, within GFF4587at 177.258 kb on + strand, within GFF4587at 177.258 kb on + strand, within GFF4587at 177.259 kb on - strand, within GFF4587at 177.352 kb on - strandat 177.352 kb on - strandat 177.360 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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174,147 + GFF4584 0.89 -1.2
174,147 + GFF4584 0.89 -0.4
174,305 + +0.0
174,540 + +1.4
174,628 + +1.3
174,629 - -2.8
174,640 + +1.0
174,641 - +1.1
174,641 - -0.5
174,727 + GFF4585 0.48 +1.0
174,727 + GFF4585 0.48 +0.3
174,727 + GFF4585 0.48 +0.2
174,727 + GFF4585 0.48 +0.9
174,727 + GFF4585 0.48 -0.5
174,727 + GFF4585 0.48 +1.6
174,727 + GFF4585 0.48 -0.9
174,727 + GFF4585 0.48 -0.7
174,727 + GFF4585 0.48 -0.9
174,727 + GFF4585 0.48 +0.9
174,727 + GFF4585 0.48 -0.6
174,728 - GFF4585 0.48 +1.2
174,728 - GFF4585 0.48 +0.2
174,728 - GFF4585 0.48 +0.1
174,728 - GFF4585 0.48 -0.1
174,728 - GFF4585 0.48 +0.7
174,728 - GFF4585 0.48 +1.8
174,728 - GFF4585 0.48 +0.2
174,728 - GFF4585 0.48 +0.8
174,728 - GFF4585 0.48 -1.1
174,728 - GFF4585 0.48 +0.5
174,731 + GFF4585 0.50 -1.3
174,732 - GFF4585 0.50 +0.1
174,732 - GFF4585 0.50 +0.9
174,810 + +0.1
174,811 - -0.1
174,811 - +0.0
174,982 + +0.6
174,982 + +1.3
175,079 + -1.4
175,079 + -0.0
175,080 - +0.1
175,123 + +0.2
175,124 - -0.0
175,124 - +0.8
175,124 - -0.3
175,129 + -1.3
175,252 + GFF4586 0.12 +0.9
175,252 + GFF4586 0.12 +1.2
175,252 + GFF4586 0.12 +0.7
175,253 - GFF4586 0.12 +1.2
175,253 - GFF4586 0.12 +0.8
175,327 + GFF4586 0.17 +0.4
175,328 - GFF4586 0.17 -1.4
175,420 - GFF4586 0.24 -0.2
175,559 - GFF4586 0.33 +0.5
175,642 + GFF4586 0.39 +0.8
175,690 + GFF4586 0.42 -1.5
175,691 - GFF4586 0.42 -0.6
175,693 - GFF4586 0.42 +0.2
175,732 + GFF4586 0.45 -0.2
175,732 + GFF4586 0.45 +0.1
175,733 - GFF4586 0.45 +0.7
175,756 - GFF4586 0.46 -0.4
175,801 + GFF4586 0.49 +0.3
175,801 + GFF4586 0.49 -0.4
175,801 + GFF4586 0.49 -0.5
175,801 + GFF4586 0.49 +0.6
175,801 + GFF4586 0.49 -0.3
175,801 + GFF4586 0.49 +0.9
175,801 + GFF4586 0.49 +0.3
175,802 - GFF4586 0.49 +0.3
175,802 - GFF4586 0.49 -0.8
175,802 - GFF4586 0.49 -0.6
175,802 - GFF4586 0.49 +0.8
175,802 - GFF4586 0.49 +0.6
175,810 + GFF4586 0.50 -0.4
175,904 - GFF4586 0.56 -0.3
175,925 - GFF4586 0.58 -0.0
175,957 + GFF4586 0.60 +0.1
175,957 + GFF4586 0.60 -1.0
175,957 + GFF4586 0.60 +1.5
175,957 + GFF4586 0.60 +0.5
176,095 + GFF4586 0.69 -0.5
176,095 + GFF4586 0.69 +0.5
176,095 + GFF4586 0.69 -0.7
176,095 + GFF4586 0.69 -0.0
176,221 + GFF4586 0.78 +0.5
176,222 - GFF4586 0.78 +0.1
176,222 - GFF4586 0.78 +1.4
176,326 + GFF4586 0.85 +0.7
176,326 + GFF4586 0.85 -0.5
176,326 + GFF4586 0.85 +0.4
176,326 + GFF4586 0.85 -0.0
176,326 + GFF4586 0.85 +0.1
176,327 - GFF4586 0.85 +1.1
176,327 - GFF4586 0.85 +0.0
176,327 - GFF4586 0.85 +0.6
176,328 + GFF4586 0.85 -2.0
176,329 - GFF4586 0.85 +0.8
176,404 + GFF4586 0.90 -0.9
176,405 - -1.2
176,405 - -1.2
176,601 - +1.7
176,601 - -0.6
176,763 + GFF4587 0.19 +0.2
176,763 + GFF4587 0.19 -1.4
176,764 - GFF4587 0.19 +0.6
176,764 - GFF4587 0.19 +1.8
176,787 + GFF4587 0.22 +1.1
176,942 + GFF4587 0.42 +1.3
176,942 + GFF4587 0.42 +0.0
176,943 - GFF4587 0.43 -0.2
176,943 - GFF4587 0.43 -0.2
176,943 - GFF4587 0.43 +1.1
176,943 - GFF4587 0.43 -0.4
177,123 + GFF4587 0.66 +2.4
177,123 + GFF4587 0.66 +1.3
177,123 + GFF4587 0.66 -0.2
177,124 - GFF4587 0.66 -0.1
177,124 - GFF4587 0.66 +0.2
177,240 + GFF4587 0.81 -0.3
177,241 - GFF4587 0.82 +1.4
177,241 - GFF4587 0.82 +0.4
177,258 + GFF4587 0.84 +0.2
177,258 + GFF4587 0.84 +0.9
177,259 - GFF4587 0.84 +0.9
177,352 - +0.0
177,352 - +0.3
177,360 + -1.4

Or see this region's nucleotide sequence