Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4583 and GFF4584 are separated by 346 nucleotides GFF4584 and GFF4585 are separated by 287 nucleotides GFF4585 and GFF4586 are separated by 240 nucleotides
GFF4583 - hypothetical protein, at 169,852 to 172,221
GFF4583
GFF4584 - Nif-specific regulatory protein, at 172,568 to 174,346
GFF4584
GFF4585 - Ferredoxin-1, at 174,634 to 174,828
GFF4585
GFF4586 - FeS cluster assembly protein SufB, at 175,069 to 176,553
GFF4586
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 171.898 kb on + strand, within GFF4583 at 171.898 kb on + strand, within GFF4583 at 171.941 kb on - strand, within GFF4583 at 172.661 kb on + strand at 172.724 kb on - strand at 173.243 kb on + strand, within GFF4584 at 173.244 kb on - strand, within GFF4584 at 173.244 kb on - strand, within GFF4584 at 173.681 kb on + strand, within GFF4584 at 173.730 kb on - strand, within GFF4584 at 173.730 kb on - strand, within GFF4584 at 173.732 kb on + strand, within GFF4584 at 173.870 kb on + strand, within GFF4584 at 173.989 kb on + strand, within GFF4584 at 174.057 kb on - strand, within GFF4584 at 174.147 kb on + strand, within GFF4584 at 174.147 kb on + strand, within GFF4584 at 174.305 kb on + strand at 174.540 kb on + strand at 174.628 kb on + strand at 174.629 kb on - strand at 174.640 kb on + strand at 174.641 kb on - strand at 174.641 kb on - strand at 174.727 kb on + strand, within GFF4585 at 174.727 kb on + strand, within GFF4585 at 174.727 kb on + strand, within GFF4585 at 174.727 kb on + strand, within GFF4585 at 174.727 kb on + strand, within GFF4585 at 174.727 kb on + strand, within GFF4585 at 174.727 kb on + strand, within GFF4585 at 174.727 kb on + strand, within GFF4585 at 174.727 kb on + strand, within GFF4585 at 174.727 kb on + strand, within GFF4585 at 174.727 kb on + strand, within GFF4585 at 174.728 kb on - strand, within GFF4585 at 174.728 kb on - strand, within GFF4585 at 174.728 kb on - strand, within GFF4585 at 174.728 kb on - strand, within GFF4585 at 174.728 kb on - strand, within GFF4585 at 174.728 kb on - strand, within GFF4585 at 174.728 kb on - strand, within GFF4585 at 174.728 kb on - strand, within GFF4585 at 174.728 kb on - strand, within GFF4585 at 174.728 kb on - strand, within GFF4585 at 174.731 kb on + strand, within GFF4585 at 174.732 kb on - strand, within GFF4585 at 174.732 kb on - strand, within GFF4585 at 174.810 kb on + strand at 174.811 kb on - strand at 174.811 kb on - strand at 174.982 kb on + strand at 174.982 kb on + strand at 175.079 kb on + strand at 175.079 kb on + strand at 175.080 kb on - strand at 175.123 kb on + strand at 175.124 kb on - strand at 175.124 kb on - strand at 175.124 kb on - strand at 175.129 kb on + strand at 175.252 kb on + strand, within GFF4586 at 175.252 kb on + strand, within GFF4586 at 175.252 kb on + strand, within GFF4586 at 175.253 kb on - strand, within GFF4586 at 175.253 kb on - strand, within GFF4586 at 175.327 kb on + strand, within GFF4586 at 175.328 kb on - strand, within GFF4586
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 171,898 + GFF4583 0.86 -1.2 171,898 + GFF4583 0.86 -2.3 171,941 - GFF4583 0.88 -0.4 172,661 + +0.0 172,724 - +0.0 173,243 + GFF4584 0.38 +0.7 173,244 - GFF4584 0.38 +0.2 173,244 - GFF4584 0.38 -0.9 173,681 + GFF4584 0.63 -0.0 173,730 - GFF4584 0.65 +0.3 173,730 - GFF4584 0.65 +0.1 173,732 + GFF4584 0.65 +0.7 173,870 + GFF4584 0.73 +0.2 173,989 + GFF4584 0.80 +0.4 174,057 - GFF4584 0.84 -0.3 174,147 + GFF4584 0.89 -1.2 174,147 + GFF4584 0.89 -0.4 174,305 + +0.0 174,540 + +1.4 174,628 + +1.3 174,629 - -2.8 174,640 + +1.0 174,641 - +1.1 174,641 - -0.5 174,727 + GFF4585 0.48 +1.0 174,727 + GFF4585 0.48 +0.3 174,727 + GFF4585 0.48 +0.2 174,727 + GFF4585 0.48 +0.9 174,727 + GFF4585 0.48 -0.5 174,727 + GFF4585 0.48 +1.6 174,727 + GFF4585 0.48 -0.9 174,727 + GFF4585 0.48 -0.7 174,727 + GFF4585 0.48 -0.9 174,727 + GFF4585 0.48 +0.9 174,727 + GFF4585 0.48 -0.6 174,728 - GFF4585 0.48 +1.2 174,728 - GFF4585 0.48 +0.2 174,728 - GFF4585 0.48 +0.1 174,728 - GFF4585 0.48 -0.1 174,728 - GFF4585 0.48 +0.7 174,728 - GFF4585 0.48 +1.8 174,728 - GFF4585 0.48 +0.2 174,728 - GFF4585 0.48 +0.8 174,728 - GFF4585 0.48 -1.1 174,728 - GFF4585 0.48 +0.5 174,731 + GFF4585 0.50 -1.3 174,732 - GFF4585 0.50 +0.1 174,732 - GFF4585 0.50 +0.9 174,810 + +0.1 174,811 - -0.1 174,811 - +0.0 174,982 + +0.6 174,982 + +1.3 175,079 + -1.4 175,079 + -0.0 175,080 - +0.1 175,123 + +0.2 175,124 - -0.0 175,124 - +0.8 175,124 - -0.3 175,129 + -1.3 175,252 + GFF4586 0.12 +0.9 175,252 + GFF4586 0.12 +1.2 175,252 + GFF4586 0.12 +0.7 175,253 - GFF4586 0.12 +1.2 175,253 - GFF4586 0.12 +0.8 175,327 + GFF4586 0.17 +0.4 175,328 - GFF4586 0.17 -1.4
Or see this region's nucleotide sequence