Strain Fitness in Xanthobacter sp. DMC5 around GFF4578

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4576 and GFF4577 are separated by 2 nucleotidesGFF4577 and GFF4578 are separated by 224 nucleotidesGFF4578 and GFF4579 overlap by 34 nucleotides GFF4576 - hypothetical protein, at 164,711 to 165,289 GFF4576 GFF4577 - Chromosomal replication initiator protein DnaA, at 165,292 to 165,675 GFF4577 GFF4578 - hypothetical protein, at 165,900 to 166,199 GFF4578 GFF4579 - O-acetylserine sulfhydrylase, at 166,166 to 167,149 GFF4579 Position (kb) 165 166 167Strain fitness (log2 ratio) -1 0 1at 164.916 kb on - strand, within GFF4576at 165.467 kb on + strand, within GFF4577at 165.467 kb on + strand, within GFF4577at 165.900 kb on - strandat 166.071 kb on + strand, within GFF4578at 166.116 kb on - strand, within GFF4578at 166.197 kb on + strandat 167.088 kb on + strandat 167.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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164,916 - GFF4576 0.35 +0.4
165,467 + GFF4577 0.46 -0.3
165,467 + GFF4577 0.46 -0.8
165,900 - -0.8
166,071 + GFF4578 0.57 +0.2
166,116 - GFF4578 0.72 -1.0
166,197 + +0.3
167,088 + -0.0
167,089 - -0.7

Or see this region's nucleotide sequence