Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4525 and GFF4526 are separated by 222 nucleotides GFF4526 and GFF4527 overlap by 14 nucleotides GFF4527 and GFF4528 are separated by 426 nucleotides GFF4528 and GFF4529 are separated by 100 nucleotides
GFF4525 - Regulator of RpoS, at 99,415 to 100,710
GFF4525
GFF4526 - Sporulation initiation phosphotransferase F, at 100,933 to 101,316
GFF4526
GFF4527 - Adaptive-response sensory-kinase SasA, at 101,303 to 103,384
GFF4527
GFF4528 - hypothetical protein, at 103,811 to 104,179
GFF4528
GFF4529 - Maleylpyruvate isomerase, at 104,280 to 104,915
GFF4529
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 100.414 kb on + strand, within GFF4525 at 100.414 kb on + strand, within GFF4525 at 100.414 kb on + strand, within GFF4525 at 100.415 kb on - strand, within GFF4525 at 100.415 kb on - strand, within GFF4525 at 100.415 kb on - strand, within GFF4525 at 100.572 kb on + strand, within GFF4525 at 100.572 kb on + strand, within GFF4525 at 100.573 kb on - strand, within GFF4525 at 100.573 kb on - strand, within GFF4525 at 100.573 kb on - strand, within GFF4525 at 100.573 kb on - strand, within GFF4525 at 100.743 kb on - strand at 100.774 kb on + strand at 100.919 kb on - strand at 100.970 kb on - strand at 100.970 kb on - strand at 101.089 kb on + strand, within GFF4526 at 101.092 kb on - strand, within GFF4526 at 101.092 kb on - strand, within GFF4526 at 101.577 kb on - strand, within GFF4527 at 101.585 kb on + strand, within GFF4527 at 101.585 kb on + strand, within GFF4527 at 101.586 kb on - strand, within GFF4527 at 101.720 kb on - strand, within GFF4527 at 101.801 kb on + strand, within GFF4527 at 101.802 kb on - strand, within GFF4527 at 101.802 kb on - strand, within GFF4527 at 101.802 kb on - strand, within GFF4527 at 101.802 kb on - strand, within GFF4527 at 101.870 kb on + strand, within GFF4527 at 101.870 kb on + strand, within GFF4527 at 101.870 kb on + strand, within GFF4527 at 101.870 kb on + strand, within GFF4527 at 101.870 kb on + strand, within GFF4527 at 101.871 kb on - strand, within GFF4527 at 101.871 kb on - strand, within GFF4527 at 101.871 kb on - strand, within GFF4527 at 101.871 kb on - strand, within GFF4527 at 101.871 kb on - strand, within GFF4527 at 101.871 kb on - strand, within GFF4527 at 101.871 kb on - strand, within GFF4527 at 101.871 kb on - strand, within GFF4527 at 101.871 kb on - strand, within GFF4527 at 101.871 kb on - strand, within GFF4527 at 101.871 kb on - strand, within GFF4527 at 101.898 kb on - strand, within GFF4527 at 101.898 kb on - strand, within GFF4527 at 102.051 kb on - strand, within GFF4527 at 102.051 kb on - strand, within GFF4527 at 102.092 kb on + strand, within GFF4527 at 102.093 kb on - strand, within GFF4527 at 102.093 kb on - strand, within GFF4527 at 102.093 kb on - strand, within GFF4527 at 102.113 kb on + strand, within GFF4527 at 102.137 kb on + strand, within GFF4527 at 102.137 kb on + strand, within GFF4527 at 102.248 kb on + strand, within GFF4527 at 102.249 kb on - strand, within GFF4527 at 102.431 kb on + strand, within GFF4527 at 102.431 kb on + strand, within GFF4527 at 102.432 kb on - strand, within GFF4527 at 102.522 kb on + strand, within GFF4527 at 102.641 kb on + strand, within GFF4527 at 102.641 kb on + strand, within GFF4527 at 102.642 kb on - strand, within GFF4527 at 102.756 kb on - strand, within GFF4527 at 103.844 kb on + strand at 103.844 kb on + strand at 103.845 kb on - strand at 103.857 kb on - strand, within GFF4528 at 103.920 kb on - strand, within GFF4528 at 104.006 kb on + strand, within GFF4528 at 104.289 kb on + strand at 104.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 100,414 + GFF4525 0.77 -2.6 100,414 + GFF4525 0.77 -1.7 100,414 + GFF4525 0.77 -2.1 100,415 - GFF4525 0.77 +1.6 100,415 - GFF4525 0.77 +1.2 100,415 - GFF4525 0.77 +2.5 100,572 + GFF4525 0.89 -0.2 100,572 + GFF4525 0.89 +0.9 100,573 - GFF4525 0.89 +0.8 100,573 - GFF4525 0.89 +1.3 100,573 - GFF4525 0.89 +0.4 100,573 - GFF4525 0.89 +0.1 100,743 - +0.5 100,774 + +0.3 100,919 - -0.3 100,970 - -1.5 100,970 - +0.5 101,089 + GFF4526 0.41 +1.0 101,092 - GFF4526 0.41 -1.5 101,092 - GFF4526 0.41 -1.3 101,577 - GFF4527 0.13 +0.1 101,585 + GFF4527 0.14 -2.0 101,585 + GFF4527 0.14 -1.4 101,586 - GFF4527 0.14 -0.5 101,720 - GFF4527 0.20 -1.7 101,801 + GFF4527 0.24 -2.2 101,802 - GFF4527 0.24 -0.4 101,802 - GFF4527 0.24 +0.3 101,802 - GFF4527 0.24 -1.4 101,802 - GFF4527 0.24 -2.1 101,870 + GFF4527 0.27 -1.9 101,870 + GFF4527 0.27 -2.2 101,870 + GFF4527 0.27 -1.4 101,870 + GFF4527 0.27 -2.5 101,870 + GFF4527 0.27 -2.0 101,871 - GFF4527 0.27 -1.5 101,871 - GFF4527 0.27 -0.5 101,871 - GFF4527 0.27 -1.4 101,871 - GFF4527 0.27 -1.2 101,871 - GFF4527 0.27 -0.5 101,871 - GFF4527 0.27 -0.9 101,871 - GFF4527 0.27 -1.4 101,871 - GFF4527 0.27 -0.8 101,871 - GFF4527 0.27 -1.1 101,871 - GFF4527 0.27 +1.0 101,871 - GFF4527 0.27 -1.9 101,898 - GFF4527 0.29 -1.9 101,898 - GFF4527 0.29 -2.2 102,051 - GFF4527 0.36 -1.5 102,051 - GFF4527 0.36 -1.6 102,092 + GFF4527 0.38 -1.6 102,093 - GFF4527 0.38 -1.9 102,093 - GFF4527 0.38 +1.6 102,093 - GFF4527 0.38 -1.1 102,113 + GFF4527 0.39 -0.4 102,137 + GFF4527 0.40 -1.4 102,137 + GFF4527 0.40 -1.4 102,248 + GFF4527 0.45 -1.5 102,249 - GFF4527 0.45 -2.4 102,431 + GFF4527 0.54 -0.3 102,431 + GFF4527 0.54 -1.3 102,432 - GFF4527 0.54 -1.7 102,522 + GFF4527 0.59 -2.3 102,641 + GFF4527 0.64 -0.5 102,641 + GFF4527 0.64 -1.2 102,642 - GFF4527 0.64 -0.4 102,756 - GFF4527 0.70 -0.0 103,844 + -0.3 103,844 + -2.1 103,845 - +1.0 103,857 - GFF4528 0.12 +0.4 103,920 - GFF4528 0.30 +0.8 104,006 + GFF4528 0.53 +1.6 104,289 + -0.2 104,316 + +0.9
Or see this region's nucleotide sequence