Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4508 and GFF4509 are separated by 90 nucleotides GFF4509 and GFF4510 are separated by 2 nucleotides GFF4510 and GFF4511 are separated by 27 nucleotides GFF4511 and GFF4512 are separated by 7 nucleotides GFF4512 and GFF4513 are separated by 2 nucleotides
GFF4508 - flagellum biosynthesis repressor protein FlbT, at 84,097 to 84,510
GFF4508
GFF4509 - hypothetical protein, at 84,601 to 85,008
GFF4509
GFF4510 - hypothetical protein, at 85,011 to 85,277
GFF4510
GFF4511 - Flagellar biosynthesis protein FlhA, at 85,305 to 87,386
GFF4511
GFF4512 - hypothetical protein, at 87,394 to 88,149
GFF4512
GFF4513 - hypothetical protein, at 88,152 to 88,553
GFF4513
Position (kb) 85
86
87
88 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 84.686 kb on - strand, within GFF4509 at 84.763 kb on + strand, within GFF4509 at 84.763 kb on + strand, within GFF4509 at 84.763 kb on + strand, within GFF4509 at 84.764 kb on - strand, within GFF4509 at 84.764 kb on - strand, within GFF4509 at 84.764 kb on - strand, within GFF4509 at 84.936 kb on + strand, within GFF4509 at 85.251 kb on + strand at 85.252 kb on - strand at 85.316 kb on + strand at 85.316 kb on + strand at 85.316 kb on + strand at 85.317 kb on - strand at 85.422 kb on + strand at 85.991 kb on + strand, within GFF4511 at 86.151 kb on + strand, within GFF4511 at 86.152 kb on - strand, within GFF4511 at 86.152 kb on - strand, within GFF4511 at 86.188 kb on + strand, within GFF4511 at 86.188 kb on + strand, within GFF4511 at 86.188 kb on + strand, within GFF4511 at 86.189 kb on - strand, within GFF4511 at 86.189 kb on - strand, within GFF4511 at 86.487 kb on + strand, within GFF4511 at 86.548 kb on - strand, within GFF4511 at 86.703 kb on + strand, within GFF4511 at 86.703 kb on + strand, within GFF4511 at 86.704 kb on - strand, within GFF4511 at 86.704 kb on - strand, within GFF4511 at 86.811 kb on + strand, within GFF4511 at 86.812 kb on - strand, within GFF4511 at 86.854 kb on - strand, within GFF4511 at 86.854 kb on - strand, within GFF4511 at 86.873 kb on + strand, within GFF4511 at 86.873 kb on + strand, within GFF4511 at 86.873 kb on + strand, within GFF4511 at 86.874 kb on - strand, within GFF4511 at 86.874 kb on - strand, within GFF4511 at 87.282 kb on + strand at 87.282 kb on + strand at 87.282 kb on + strand at 87.282 kb on + strand at 87.283 kb on - strand at 87.283 kb on - strand at 87.283 kb on - strand at 87.492 kb on + strand, within GFF4512 at 87.492 kb on + strand, within GFF4512 at 87.492 kb on + strand, within GFF4512 at 87.492 kb on + strand, within GFF4512 at 87.492 kb on + strand, within GFF4512 at 87.492 kb on + strand, within GFF4512 at 87.492 kb on + strand, within GFF4512 at 87.492 kb on + strand, within GFF4512 at 87.493 kb on - strand, within GFF4512 at 87.493 kb on - strand, within GFF4512 at 87.493 kb on - strand, within GFF4512 at 87.493 kb on - strand, within GFF4512 at 87.664 kb on + strand, within GFF4512 at 88.034 kb on - strand, within GFF4512 at 88.081 kb on + strand at 88.081 kb on + strand at 88.082 kb on - strand at 88.082 kb on - strand at 88.082 kb on - strand at 88.082 kb on - strand at 88.082 kb on - strand at 88.082 kb on - strand at 88.082 kb on - strand at 88.082 kb on - strand at 88.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 84,686 - GFF4509 0.21 -1.2 84,763 + GFF4509 0.40 -2.3 84,763 + GFF4509 0.40 -0.3 84,763 + GFF4509 0.40 -0.0 84,764 - GFF4509 0.40 -3.4 84,764 - GFF4509 0.40 -0.7 84,764 - GFF4509 0.40 -2.0 84,936 + GFF4509 0.82 +0.3 85,251 + -1.7 85,252 - -2.6 85,316 + -3.5 85,316 + -2.1 85,316 + -0.9 85,317 - -1.3 85,422 + -1.2 85,991 + GFF4511 0.33 -0.5 86,151 + GFF4511 0.41 -0.4 86,152 - GFF4511 0.41 -2.0 86,152 - GFF4511 0.41 -1.5 86,188 + GFF4511 0.42 -0.9 86,188 + GFF4511 0.42 -1.6 86,188 + GFF4511 0.42 +0.9 86,189 - GFF4511 0.42 -0.3 86,189 - GFF4511 0.42 -1.9 86,487 + GFF4511 0.57 -1.0 86,548 - GFF4511 0.60 -0.6 86,703 + GFF4511 0.67 -1.2 86,703 + GFF4511 0.67 -1.2 86,704 - GFF4511 0.67 -1.1 86,704 - GFF4511 0.67 -0.9 86,811 + GFF4511 0.72 -1.9 86,812 - GFF4511 0.72 +1.1 86,854 - GFF4511 0.74 -2.0 86,854 - GFF4511 0.74 -0.4 86,873 + GFF4511 0.75 -1.0 86,873 + GFF4511 0.75 -1.5 86,873 + GFF4511 0.75 -0.8 86,874 - GFF4511 0.75 -0.3 86,874 - GFF4511 0.75 -0.4 87,282 + -1.7 87,282 + -0.3 87,282 + -2.4 87,282 + -0.4 87,283 - -0.1 87,283 - -1.5 87,283 - -1.4 87,492 + GFF4512 0.13 -1.0 87,492 + GFF4512 0.13 +0.5 87,492 + GFF4512 0.13 -2.6 87,492 + GFF4512 0.13 -0.8 87,492 + GFF4512 0.13 -0.0 87,492 + GFF4512 0.13 -0.4 87,492 + GFF4512 0.13 -1.5 87,492 + GFF4512 0.13 -0.0 87,493 - GFF4512 0.13 -0.6 87,493 - GFF4512 0.13 -1.3 87,493 - GFF4512 0.13 -1.4 87,493 - GFF4512 0.13 -1.2 87,664 + GFF4512 0.36 -1.5 88,034 - GFF4512 0.85 -0.5 88,081 + +0.1 88,081 + -0.8 88,082 - -1.9 88,082 - -2.2 88,082 - -0.8 88,082 - -1.3 88,082 - -1.8 88,082 - -1.3 88,082 - -0.5 88,082 - +0.1 88,082 - -1.5
Or see this region's nucleotide sequence