Strain Fitness in Xanthobacter sp. DMC5 around GFF451

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF449 and GFF450 are separated by 158 nucleotidesGFF450 and GFF451 are separated by 84 nucleotidesGFF451 and GFF452 overlap by 1 nucleotides GFF449 - Alkyl hydroperoxide reductase subunit F, at 472,476 to 473,417 GFF449 GFF450 - hypothetical protein, at 473,576 to 473,866 GFF450 GFF451 - Beta-barrel assembly-enhancing protease, at 473,951 to 476,056 GFF451 GFF452 - hypothetical protein, at 476,056 to 481,188 GFF452 Position (kb) 473 474 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1at 473.403 kb on + strandat 473.403 kb on + strandat 473.404 kb on - strandat 473.460 kb on + strandat 473.465 kb on + strandat 473.488 kb on + strandat 473.735 kb on + strand, within GFF450at 473.736 kb on - strand, within GFF450at 473.753 kb on + strand, within GFF450at 473.824 kb on + strand, within GFF450at 473.864 kb on + strandat 473.864 kb on + strandat 474.025 kb on - strandat 474.025 kb on - strandat 474.025 kb on - strandat 474.171 kb on + strand, within GFF451at 474.171 kb on + strand, within GFF451at 474.234 kb on + strand, within GFF451at 474.235 kb on - strand, within GFF451at 474.235 kb on - strand, within GFF451at 474.270 kb on + strand, within GFF451at 474.270 kb on + strand, within GFF451at 474.271 kb on - strand, within GFF451at 474.277 kb on - strand, within GFF451at 474.396 kb on + strand, within GFF451at 474.396 kb on + strand, within GFF451at 474.396 kb on + strand, within GFF451at 474.396 kb on + strand, within GFF451at 474.397 kb on - strand, within GFF451at 474.397 kb on - strand, within GFF451at 474.397 kb on - strand, within GFF451at 474.463 kb on - strand, within GFF451at 474.519 kb on + strand, within GFF451at 474.771 kb on + strand, within GFF451at 474.771 kb on + strand, within GFF451at 474.772 kb on - strand, within GFF451at 474.772 kb on - strand, within GFF451at 474.772 kb on - strand, within GFF451at 474.772 kb on - strand, within GFF451at 474.772 kb on - strand, within GFF451at 474.849 kb on + strand, within GFF451at 474.849 kb on + strand, within GFF451at 474.849 kb on + strand, within GFF451at 474.849 kb on + strand, within GFF451at 474.849 kb on + strand, within GFF451at 474.849 kb on + strand, within GFF451at 474.850 kb on - strand, within GFF451at 474.850 kb on - strand, within GFF451at 474.850 kb on - strand, within GFF451at 474.850 kb on - strand, within GFF451at 474.850 kb on - strand, within GFF451at 474.850 kb on - strand, within GFF451at 474.867 kb on + strand, within GFF451at 475.278 kb on + strand, within GFF451at 475.278 kb on + strand, within GFF451at 475.279 kb on - strand, within GFF451at 475.279 kb on - strand, within GFF451at 475.384 kb on + strand, within GFF451at 475.384 kb on + strand, within GFF451at 475.385 kb on - strand, within GFF451at 475.385 kb on - strand, within GFF451at 475.386 kb on + strand, within GFF451at 475.386 kb on + strand, within GFF451at 475.398 kb on + strand, within GFF451at 475.399 kb on - strand, within GFF451at 475.705 kb on - strand, within GFF451at 475.797 kb on + strand, within GFF451at 475.797 kb on + strand, within GFF451at 475.797 kb on + strand, within GFF451at 475.798 kb on - strand, within GFF451at 475.798 kb on - strand, within GFF451at 475.990 kb on - strandat 476.099 kb on + strandat 476.099 kb on + strandat 476.100 kb on - strandat 476.274 kb on - strandat 476.395 kb on + strandat 476.450 kb on + strandat 476.465 kb on + strandat 476.465 kb on + strandat 476.492 kb on + strandat 476.493 kb on - strandat 476.498 kb on + strandat 476.499 kb on - strandat 476.499 kb on - strandat 476.499 kb on - strandat 476.576 kb on + strand, within GFF452at 476.600 kb on + strand, within GFF452at 476.609 kb on + strand, within GFF452at 476.615 kb on + strand, within GFF452at 476.615 kb on + strand, within GFF452at 476.615 kb on + strand, within GFF452at 476.616 kb on - strand, within GFF452at 476.636 kb on + strand, within GFF452at 476.637 kb on - strand, within GFF452at 476.663 kb on + strand, within GFF452at 476.664 kb on - strand, within GFF452at 476.834 kb on + strand, within GFF452at 476.834 kb on + strand, within GFF452at 476.834 kb on + strand, within GFF452at 476.835 kb on - strand, within GFF452at 476.952 kb on - strand, within GFF452at 476.987 kb on + strand, within GFF452

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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473,403 + -2.2
473,403 + -0.6
473,404 - -0.8
473,460 + +1.1
473,465 + -2.5
473,488 + -1.6
473,735 + GFF450 0.55 -0.2
473,736 - GFF450 0.55 -0.6
473,753 + GFF450 0.61 +0.9
473,824 + GFF450 0.85 +1.0
473,864 + -1.3
473,864 + +0.9
474,025 - -0.2
474,025 - -0.1
474,025 - +0.3
474,171 + GFF451 0.10 +0.9
474,171 + GFF451 0.10 -1.8
474,234 + GFF451 0.13 +0.4
474,235 - GFF451 0.13 -1.4
474,235 - GFF451 0.13 +1.4
474,270 + GFF451 0.15 -0.8
474,270 + GFF451 0.15 -0.5
474,271 - GFF451 0.15 -0.4
474,277 - GFF451 0.15 +0.7
474,396 + GFF451 0.21 +0.3
474,396 + GFF451 0.21 -0.4
474,396 + GFF451 0.21 -2.1
474,396 + GFF451 0.21 -0.9
474,397 - GFF451 0.21 -0.1
474,397 - GFF451 0.21 -0.5
474,397 - GFF451 0.21 +0.3
474,463 - GFF451 0.24 -0.0
474,519 + GFF451 0.27 -0.3
474,771 + GFF451 0.39 +0.5
474,771 + GFF451 0.39 -0.8
474,772 - GFF451 0.39 +0.2
474,772 - GFF451 0.39 -0.1
474,772 - GFF451 0.39 +1.5
474,772 - GFF451 0.39 +0.8
474,772 - GFF451 0.39 +0.5
474,849 + GFF451 0.43 -0.6
474,849 + GFF451 0.43 -2.1
474,849 + GFF451 0.43 -0.3
474,849 + GFF451 0.43 -1.2
474,849 + GFF451 0.43 +0.6
474,849 + GFF451 0.43 -1.3
474,850 - GFF451 0.43 -0.9
474,850 - GFF451 0.43 -0.3
474,850 - GFF451 0.43 -0.2
474,850 - GFF451 0.43 +0.2
474,850 - GFF451 0.43 +0.0
474,850 - GFF451 0.43 +1.1
474,867 + GFF451 0.43 +1.0
475,278 + GFF451 0.63 +0.4
475,278 + GFF451 0.63 -1.5
475,279 - GFF451 0.63 -1.0
475,279 - GFF451 0.63 -0.3
475,384 + GFF451 0.68 +0.5
475,384 + GFF451 0.68 -1.1
475,385 - GFF451 0.68 +0.5
475,385 - GFF451 0.68 -0.9
475,386 + GFF451 0.68 -1.3
475,386 + GFF451 0.68 -0.6
475,398 + GFF451 0.69 -1.0
475,399 - GFF451 0.69 -1.2
475,705 - GFF451 0.83 +0.2
475,797 + GFF451 0.88 -0.9
475,797 + GFF451 0.88 -0.0
475,797 + GFF451 0.88 +0.4
475,798 - GFF451 0.88 -0.1
475,798 - GFF451 0.88 +0.1
475,990 - +0.2
476,099 + +0.2
476,099 + -0.8
476,100 - -0.5
476,274 - -0.2
476,395 + +0.8
476,450 + +0.0
476,465 + +0.2
476,465 + +0.9
476,492 + -0.6
476,493 - +0.5
476,498 + +0.4
476,499 - -0.0
476,499 - -3.3
476,499 - -1.9
476,576 + GFF452 0.10 -1.1
476,600 + GFF452 0.11 -0.9
476,609 + GFF452 0.11 -1.2
476,615 + GFF452 0.11 -2.2
476,615 + GFF452 0.11 +0.1
476,615 + GFF452 0.11 +0.4
476,616 - GFF452 0.11 -0.8
476,636 + GFF452 0.11 +0.1
476,637 - GFF452 0.11 +0.9
476,663 + GFF452 0.12 -0.5
476,664 - GFF452 0.12 +0.9
476,834 + GFF452 0.15 -1.0
476,834 + GFF452 0.15 -1.3
476,834 + GFF452 0.15 -0.1
476,835 - GFF452 0.15 -1.7
476,952 - GFF452 0.17 +0.1
476,987 + GFF452 0.18 -1.0

Or see this region's nucleotide sequence