Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4490 and GFF4491 are separated by 10 nucleotides GFF4491 and GFF4492 overlap by 1 nucleotides GFF4492 and GFF4493 overlap by 4 nucleotides GFF4493 and GFF4494 are separated by 113 nucleotides GFF4494 and GFF4495 overlap by 14 nucleotides
GFF4490 - Flagellar basal-body rod protein FlgG, at 69,439 to 70,227
GFF4490
GFF4491 - Flagellar hook-basal body complex protein FliE, at 70,238 to 70,564
GFF4491
GFF4492 - Flagellar basal-body rod protein FlgC, at 70,564 to 70,986
GFF4492
GFF4493 - hypothetical protein, at 70,983 to 71,363
GFF4493
GFF4494 - hypothetical protein, at 71,477 to 71,932
GFF4494
GFF4495 - Flagellar biosynthetic protein FlhB, at 71,919 to 72,995
GFF4495
Position (kb) 70
71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 70.094 kb on + strand, within GFF4490 at 70.094 kb on + strand, within GFF4490 at 70.094 kb on + strand, within GFF4490 at 70.094 kb on + strand, within GFF4490 at 70.640 kb on + strand, within GFF4492 at 70.641 kb on - strand, within GFF4492 at 70.850 kb on + strand, within GFF4492 at 70.917 kb on + strand, within GFF4492 at 70.918 kb on - strand, within GFF4492 at 70.918 kb on - strand, within GFF4492 at 71.048 kb on - strand, within GFF4493 at 71.243 kb on + strand, within GFF4493 at 71.257 kb on + strand, within GFF4493 at 71.257 kb on + strand, within GFF4493 at 71.267 kb on + strand, within GFF4493 at 71.267 kb on + strand, within GFF4493 at 71.268 kb on - strand, within GFF4493 at 71.421 kb on + strand at 71.783 kb on + strand, within GFF4494 at 71.784 kb on - strand, within GFF4494 at 71.786 kb on - strand, within GFF4494 at 71.787 kb on + strand, within GFF4494 at 71.787 kb on + strand, within GFF4494 at 71.787 kb on + strand, within GFF4494 at 71.787 kb on + strand, within GFF4494 at 71.788 kb on - strand, within GFF4494 at 71.788 kb on - strand, within GFF4494 at 71.788 kb on - strand, within GFF4494 at 71.788 kb on - strand, within GFF4494 at 71.788 kb on - strand, within GFF4494 at 71.788 kb on - strand, within GFF4494 at 71.948 kb on - strand at 71.948 kb on - strand at 71.953 kb on + strand at 71.953 kb on + strand at 71.954 kb on - strand at 71.954 kb on - strand at 71.954 kb on - strand at 71.954 kb on - strand at 71.980 kb on + strand at 72.154 kb on + strand, within GFF4495 at 72.154 kb on + strand, within GFF4495 at 72.155 kb on - strand, within GFF4495 at 72.172 kb on + strand, within GFF4495 at 72.172 kb on + strand, within GFF4495 at 72.172 kb on + strand, within GFF4495 at 72.173 kb on - strand, within GFF4495
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 70,094 + GFF4490 0.83 -0.9 70,094 + GFF4490 0.83 -1.4 70,094 + GFF4490 0.83 -0.6 70,094 + GFF4490 0.83 -0.8 70,640 + GFF4492 0.18 -1.8 70,641 - GFF4492 0.18 -1.8 70,850 + GFF4492 0.68 +0.7 70,917 + GFF4492 0.83 +0.2 70,918 - GFF4492 0.84 -0.5 70,918 - GFF4492 0.84 -0.4 71,048 - GFF4493 0.17 -3.6 71,243 + GFF4493 0.68 -1.6 71,257 + GFF4493 0.72 -2.4 71,257 + GFF4493 0.72 +1.3 71,267 + GFF4493 0.75 -0.0 71,267 + GFF4493 0.75 -2.6 71,268 - GFF4493 0.75 -0.0 71,421 + -0.3 71,783 + GFF4494 0.67 +0.8 71,784 - GFF4494 0.67 +0.9 71,786 - GFF4494 0.68 -0.3 71,787 + GFF4494 0.68 +1.6 71,787 + GFF4494 0.68 +1.9 71,787 + GFF4494 0.68 +0.0 71,787 + GFF4494 0.68 +1.5 71,788 - GFF4494 0.68 +1.1 71,788 - GFF4494 0.68 +1.1 71,788 - GFF4494 0.68 +1.1 71,788 - GFF4494 0.68 +1.5 71,788 - GFF4494 0.68 +0.2 71,788 - GFF4494 0.68 +0.4 71,948 - +0.8 71,948 - -0.0 71,953 + +0.5 71,953 + +0.4 71,954 - -0.3 71,954 - -1.5 71,954 - -0.8 71,954 - -0.8 71,980 + -0.9 72,154 + GFF4495 0.22 -0.7 72,154 + GFF4495 0.22 +1.3 72,155 - GFF4495 0.22 -0.6 72,172 + GFF4495 0.23 -1.3 72,172 + GFF4495 0.23 -3.5 72,172 + GFF4495 0.23 -0.7 72,173 - GFF4495 0.24 -0.0
Or see this region's nucleotide sequence