Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4488 and GFF4489 overlap by 4 nucleotides GFF4489 and GFF4490 are separated by 56 nucleotides GFF4490 and GFF4491 are separated by 10 nucleotides GFF4491 and GFF4492 overlap by 1 nucleotides GFF4492 and GFF4493 overlap by 4 nucleotides
GFF4488 - Flagellar P-ring protein, at 67,725 to 68,831
GFF4488
GFF4489 - hypothetical protein, at 68,828 to 69,382
GFF4489
GFF4490 - Flagellar basal-body rod protein FlgG, at 69,439 to 70,227
GFF4490
GFF4491 - Flagellar hook-basal body complex protein FliE, at 70,238 to 70,564
GFF4491
GFF4492 - Flagellar basal-body rod protein FlgC, at 70,564 to 70,986
GFF4492
GFF4493 - hypothetical protein, at 70,983 to 71,363
GFF4493
Position (kb) 69
70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 69.394 kb on + strand at 69.394 kb on + strand at 69.395 kb on - strand at 69.395 kb on - strand at 69.509 kb on + strand at 69.510 kb on - strand at 69.575 kb on + strand, within GFF4490 at 69.575 kb on + strand, within GFF4490 at 69.654 kb on - strand, within GFF4490 at 69.755 kb on + strand, within GFF4490 at 69.755 kb on + strand, within GFF4490 at 69.755 kb on + strand, within GFF4490 at 69.755 kb on + strand, within GFF4490 at 69.756 kb on - strand, within GFF4490 at 69.828 kb on - strand, within GFF4490 at 69.887 kb on + strand, within GFF4490 at 69.887 kb on + strand, within GFF4490 at 69.888 kb on - strand, within GFF4490 at 70.094 kb on + strand, within GFF4490 at 70.094 kb on + strand, within GFF4490 at 70.094 kb on + strand, within GFF4490 at 70.094 kb on + strand, within GFF4490 at 70.640 kb on + strand, within GFF4492 at 70.641 kb on - strand, within GFF4492 at 70.850 kb on + strand, within GFF4492 at 70.917 kb on + strand, within GFF4492 at 70.918 kb on - strand, within GFF4492 at 70.918 kb on - strand, within GFF4492 at 71.048 kb on - strand, within GFF4493
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 69,394 + -1.4 69,394 + +0.8 69,395 - +0.4 69,395 - -0.7 69,509 + -0.5 69,510 - +0.3 69,575 + GFF4490 0.17 -1.4 69,575 + GFF4490 0.17 -1.5 69,654 - GFF4490 0.27 -2.0 69,755 + GFF4490 0.40 -2.0 69,755 + GFF4490 0.40 -1.5 69,755 + GFF4490 0.40 -0.9 69,755 + GFF4490 0.40 -1.6 69,756 - GFF4490 0.40 -1.0 69,828 - GFF4490 0.49 -1.4 69,887 + GFF4490 0.57 -1.6 69,887 + GFF4490 0.57 -1.1 69,888 - GFF4490 0.57 -1.6 70,094 + GFF4490 0.83 -0.9 70,094 + GFF4490 0.83 -1.4 70,094 + GFF4490 0.83 -0.6 70,094 + GFF4490 0.83 -0.8 70,640 + GFF4492 0.18 -1.8 70,641 - GFF4492 0.18 -1.8 70,850 + GFF4492 0.68 +0.7 70,917 + GFF4492 0.83 +0.2 70,918 - GFF4492 0.84 -0.5 70,918 - GFF4492 0.84 -0.4 71,048 - GFF4493 0.17 -3.6
Or see this region's nucleotide sequence