Strain Fitness in Xanthobacter sp. DMC5 around GFF4473

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4471 and GFF4472 are separated by 150 nucleotidesGFF4472 and GFF4473 are separated by 79 nucleotidesGFF4473 and GFF4474 are separated by 71 nucleotides GFF4471 - Ribonuclease D, at 49,886 to 50,506 GFF4471 GFF4472 - hypothetical protein, at 50,657 to 51,319 GFF4472 GFF4473 - hypothetical protein, at 51,399 to 52,334 GFF4473 GFF4474 - hypothetical protein, at 52,406 to 53,530 GFF4474 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1at 50.614 kb on - strandat 50.614 kb on - strandat 50.637 kb on - strandat 50.656 kb on + strandat 50.656 kb on + strandat 50.656 kb on + strandat 50.656 kb on + strandat 50.657 kb on - strandat 50.657 kb on - strandat 51.045 kb on - strand, within GFF4472at 51.158 kb on + strand, within GFF4472at 51.159 kb on - strand, within GFF4472at 51.159 kb on - strand, within GFF4472at 51.159 kb on - strand, within GFF4472at 51.343 kb on + strandat 51.344 kb on - strandat 51.360 kb on + strandat 51.361 kb on - strandat 51.507 kb on + strand, within GFF4473at 51.747 kb on + strand, within GFF4473at 51.747 kb on + strand, within GFF4473at 51.748 kb on - strand, within GFF4473at 51.748 kb on - strand, within GFF4473at 51.877 kb on - strand, within GFF4473at 51.877 kb on - strand, within GFF4473at 51.942 kb on + strand, within GFF4473at 51.942 kb on + strand, within GFF4473at 51.942 kb on + strand, within GFF4473at 51.943 kb on - strand, within GFF4473at 51.969 kb on + strand, within GFF4473at 52.193 kb on + strand, within GFF4473at 52.194 kb on - strand, within GFF4473at 52.333 kb on - strandat 52.347 kb on - strandat 52.757 kb on + strand, within GFF4474at 52.757 kb on + strand, within GFF4474at 52.757 kb on + strand, within GFF4474at 52.757 kb on + strand, within GFF4474at 52.757 kb on + strand, within GFF4474at 52.758 kb on - strand, within GFF4474at 52.758 kb on - strand, within GFF4474at 52.758 kb on - strand, within GFF4474at 52.758 kb on - strand, within GFF4474at 52.941 kb on - strand, within GFF4474at 52.981 kb on - strand, within GFF4474at 52.981 kb on - strand, within GFF4474at 53.051 kb on + strand, within GFF4474at 53.051 kb on + strand, within GFF4474at 53.052 kb on - strand, within GFF4474at 53.159 kb on + strand, within GFF4474at 53.168 kb on + strand, within GFF4474at 53.169 kb on - strand, within GFF4474at 53.169 kb on - strand, within GFF4474at 53.297 kb on + strand, within GFF4474at 53.297 kb on + strand, within GFF4474at 53.298 kb on - strand, within GFF4474at 53.298 kb on - strand, within GFF4474at 53.298 kb on - strand, within GFF4474

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
50,614 - -0.5
50,614 - +1.6
50,637 - -0.2
50,656 + +1.3
50,656 + -0.9
50,656 + +0.7
50,656 + +0.0
50,657 - +0.7
50,657 - +0.5
51,045 - GFF4472 0.59 -0.3
51,158 + GFF4472 0.76 -1.4
51,159 - GFF4472 0.76 -0.4
51,159 - GFF4472 0.76 +0.2
51,159 - GFF4472 0.76 +0.2
51,343 + -0.3
51,344 - +0.4
51,360 + +0.3
51,361 - +1.3
51,507 + GFF4473 0.12 -0.7
51,747 + GFF4473 0.37 -0.6
51,747 + GFF4473 0.37 -0.1
51,748 - GFF4473 0.37 -1.8
51,748 - GFF4473 0.37 +0.3
51,877 - GFF4473 0.51 -0.2
51,877 - GFF4473 0.51 -0.2
51,942 + GFF4473 0.58 -1.3
51,942 + GFF4473 0.58 -1.1
51,942 + GFF4473 0.58 +0.3
51,943 - GFF4473 0.58 +0.9
51,969 + GFF4473 0.61 -0.0
52,193 + GFF4473 0.85 -0.3
52,194 - GFF4473 0.85 -1.6
52,333 - +0.5
52,347 - -1.7
52,757 + GFF4474 0.31 -0.3
52,757 + GFF4474 0.31 -0.6
52,757 + GFF4474 0.31 -0.0
52,757 + GFF4474 0.31 -0.1
52,757 + GFF4474 0.31 -0.3
52,758 - GFF4474 0.31 +0.1
52,758 - GFF4474 0.31 +0.4
52,758 - GFF4474 0.31 -0.2
52,758 - GFF4474 0.31 -0.9
52,941 - GFF4474 0.48 -0.5
52,981 - GFF4474 0.51 -0.0
52,981 - GFF4474 0.51 +1.1
53,051 + GFF4474 0.57 -0.2
53,051 + GFF4474 0.57 -0.5
53,052 - GFF4474 0.57 +0.1
53,159 + GFF4474 0.67 -0.2
53,168 + GFF4474 0.68 +0.7
53,169 - GFF4474 0.68 +0.3
53,169 - GFF4474 0.68 +0.2
53,297 + GFF4474 0.79 -0.5
53,297 + GFF4474 0.79 -0.0
53,298 - GFF4474 0.79 -0.2
53,298 - GFF4474 0.79 +0.1
53,298 - GFF4474 0.79 +0.3

Or see this region's nucleotide sequence