Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4466 and GFF4467 are separated by 139 nucleotides GFF4467 and GFF4468 are separated by 37 nucleotides
GFF4466 - hypothetical protein, at 43,869 to 45,119
GFF4466
GFF4467 - RNA polymerase sigma-54 factor 2, at 45,259 to 46,824
GFF4467
GFF4468 - Vitamin B12 import ATP-binding protein BtuD, at 46,862 to 47,953
GFF4468
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 44.479 kb on + strand, within GFF4466 at 44.726 kb on - strand, within GFF4466 at 44.726 kb on - strand, within GFF4466 at 44.969 kb on - strand, within GFF4466 at 44.983 kb on + strand, within GFF4466 at 45.037 kb on + strand at 45.037 kb on + strand at 45.038 kb on - strand at 45.335 kb on + strand at 45.335 kb on + strand at 45.554 kb on + strand, within GFF4467 at 45.554 kb on + strand, within GFF4467 at 45.554 kb on + strand, within GFF4467 at 45.554 kb on + strand, within GFF4467 at 45.554 kb on + strand, within GFF4467 at 45.555 kb on - strand, within GFF4467 at 45.555 kb on - strand, within GFF4467 at 45.555 kb on - strand, within GFF4467 at 45.815 kb on + strand, within GFF4467 at 45.815 kb on + strand, within GFF4467 at 45.816 kb on - strand, within GFF4467 at 45.896 kb on + strand, within GFF4467 at 45.896 kb on + strand, within GFF4467 at 45.897 kb on - strand, within GFF4467 at 45.897 kb on - strand, within GFF4467 at 46.248 kb on - strand, within GFF4467 at 46.382 kb on + strand, within GFF4467 at 46.382 kb on + strand, within GFF4467 at 46.383 kb on - strand, within GFF4467 at 46.712 kb on + strand at 46.712 kb on + strand at 46.712 kb on + strand at 46.713 kb on - strand at 46.713 kb on - strand at 46.728 kb on + strand at 46.728 kb on + strand at 46.728 kb on + strand at 46.729 kb on - strand at 47.623 kb on - strand, within GFF4468
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 44,479 + GFF4466 0.49 +0.1 44,726 - GFF4466 0.69 -0.8 44,726 - GFF4466 0.69 +0.1 44,969 - GFF4466 0.88 +0.2 44,983 + GFF4466 0.89 -1.1 45,037 + +0.2 45,037 + +0.3 45,038 - -1.0 45,335 + -2.7 45,335 + -2.7 45,554 + GFF4467 0.19 -2.2 45,554 + GFF4467 0.19 -0.3 45,554 + GFF4467 0.19 -2.3 45,554 + GFF4467 0.19 -1.7 45,554 + GFF4467 0.19 -2.9 45,555 - GFF4467 0.19 -3.2 45,555 - GFF4467 0.19 -0.9 45,555 - GFF4467 0.19 -2.1 45,815 + GFF4467 0.36 -2.5 45,815 + GFF4467 0.36 -1.5 45,816 - GFF4467 0.36 -2.9 45,896 + GFF4467 0.41 -2.4 45,896 + GFF4467 0.41 -2.9 45,897 - GFF4467 0.41 -0.7 45,897 - GFF4467 0.41 -1.4 46,248 - GFF4467 0.63 -2.2 46,382 + GFF4467 0.72 -1.0 46,382 + GFF4467 0.72 -2.2 46,383 - GFF4467 0.72 -3.6 46,712 + -0.5 46,712 + -1.4 46,712 + -1.4 46,713 - -1.4 46,713 - -1.5 46,728 + -3.6 46,728 + -0.6 46,728 + -2.0 46,729 - -1.7 47,623 - GFF4468 0.70 -1.1
Or see this region's nucleotide sequence