Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4433 and GFF4434 overlap by 4 nucleotides GFF4434 and GFF4435 overlap by 1 nucleotides GFF4435 and GFF4436 overlap by 8 nucleotides
GFF4433 - Hydrogenase transcriptional regulatory protein hupR1, at 10,795 to 12,270
GFF4433
GFF4434 - Urease accessory protein UreG, at 12,267 to 13,262
GFF4434
GFF4435 - Hydrogenase maturation factor HybF, at 13,262 to 13,603
GFF4435
GFF4436 - hypothetical protein, at 13,596 to 14,570
GFF4436
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 11.304 kb on - strand, within GFF4433 at 11.306 kb on + strand, within GFF4433 at 11.306 kb on + strand, within GFF4433 at 11.306 kb on + strand, within GFF4433 at 11.307 kb on - strand, within GFF4433 at 11.652 kb on - strand, within GFF4433 at 11.972 kb on + strand, within GFF4433 at 11.972 kb on + strand, within GFF4433 at 11.972 kb on + strand, within GFF4433 at 11.973 kb on - strand, within GFF4433 at 11.973 kb on - strand, within GFF4433 at 11.973 kb on - strand, within GFF4433 at 12.043 kb on + strand, within GFF4433 at 12.043 kb on + strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.478 kb on + strand, within GFF4434 at 12.478 kb on + strand, within GFF4434 at 12.479 kb on - strand, within GFF4434 at 12.479 kb on - strand, within GFF4434 at 12.538 kb on + strand, within GFF4434 at 12.940 kb on + strand, within GFF4434 at 12.940 kb on + strand, within GFF4434 at 12.941 kb on - strand, within GFF4434 at 12.941 kb on - strand, within GFF4434 at 12.941 kb on - strand, within GFF4434 at 13.034 kb on - strand, within GFF4434 at 13.034 kb on - strand, within GFF4434 at 13.100 kb on + strand, within GFF4434 at 13.136 kb on + strand, within GFF4434 at 13.137 kb on - strand, within GFF4434 at 13.137 kb on - strand, within GFF4434 at 13.287 kb on + strand at 13.288 kb on - strand at 13.603 kb on + strand at 13.603 kb on + strand at 13.603 kb on + strand at 13.603 kb on + strand at 13.604 kb on - strand at 13.604 kb on - strand at 13.604 kb on - strand at 13.604 kb on - strand at 13.604 kb on - strand at 13.604 kb on - strand at 13.772 kb on - strand, within GFF4436
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 11,304 - GFF4433 0.34 +2.0 11,306 + GFF4433 0.35 -0.9 11,306 + GFF4433 0.35 +2.3 11,306 + GFF4433 0.35 -0.9 11,307 - GFF4433 0.35 +0.5 11,652 - GFF4433 0.58 -0.9 11,972 + GFF4433 0.80 +0.8 11,972 + GFF4433 0.80 +0.3 11,972 + GFF4433 0.80 -0.2 11,973 - GFF4433 0.80 +1.0 11,973 - GFF4433 0.80 +0.1 11,973 - GFF4433 0.80 -0.4 12,043 + GFF4433 0.85 +0.5 12,043 + GFF4433 0.85 -0.6 12,044 - GFF4433 0.85 +0.6 12,044 - GFF4433 0.85 -1.8 12,044 - GFF4433 0.85 +0.2 12,044 - GFF4433 0.85 +0.5 12,044 - GFF4433 0.85 +0.6 12,044 - GFF4433 0.85 -1.0 12,044 - GFF4433 0.85 -1.3 12,478 + GFF4434 0.21 -0.0 12,478 + GFF4434 0.21 +1.1 12,479 - GFF4434 0.21 +0.5 12,479 - GFF4434 0.21 +0.3 12,538 + GFF4434 0.27 +1.7 12,940 + GFF4434 0.68 -0.5 12,940 + GFF4434 0.68 -0.0 12,941 - GFF4434 0.68 +0.1 12,941 - GFF4434 0.68 +0.6 12,941 - GFF4434 0.68 +0.7 13,034 - GFF4434 0.77 +0.1 13,034 - GFF4434 0.77 +0.6 13,100 + GFF4434 0.84 -0.0 13,136 + GFF4434 0.87 -0.1 13,137 - GFF4434 0.87 -1.0 13,137 - GFF4434 0.87 +0.8 13,287 + +0.6 13,288 - +0.5 13,603 + +0.1 13,603 + +0.6 13,603 + +0.6 13,603 + +2.6 13,604 - -0.5 13,604 - -1.2 13,604 - -1.2 13,604 - +0.1 13,604 - -1.8 13,604 - +0.6 13,772 - GFF4436 0.18 -1.6
Or see this region's nucleotide sequence