Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4395 and GFF4396 are separated by 296 nucleotides GFF4396 and GFF4397 are separated by 195 nucleotides GFF4397 and GFF4398 are separated by 9 nucleotides
GFF4395 - UTP--glucose-1-phosphate uridylyltransferase, at 197,993 to 198,880
GFF4395
GFF4396 - hypothetical protein, at 199,177 to 200,502
GFF4396
GFF4397 - hypothetical protein, at 200,698 to 201,468
GFF4397
GFF4398 - Succinyl-diaminopimelate desuccinylase, at 201,478 to 202,659
GFF4398
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 198.903 kb on + strand at 198.920 kb on + strand at 198.920 kb on + strand at 198.966 kb on + strand at 199.059 kb on - strand at 199.102 kb on + strand at 199.102 kb on + strand at 199.102 kb on + strand at 199.103 kb on - strand at 199.456 kb on + strand, within GFF4396 at 199.457 kb on - strand, within GFF4396 at 199.537 kb on + strand, within GFF4396 at 199.537 kb on + strand, within GFF4396 at 199.538 kb on - strand, within GFF4396 at 199.597 kb on + strand, within GFF4396 at 199.630 kb on + strand, within GFF4396 at 199.630 kb on + strand, within GFF4396 at 199.631 kb on - strand, within GFF4396 at 199.682 kb on - strand, within GFF4396 at 199.682 kb on - strand, within GFF4396 at 199.762 kb on + strand, within GFF4396 at 199.763 kb on - strand, within GFF4396 at 199.819 kb on + strand, within GFF4396 at 199.820 kb on - strand, within GFF4396 at 200.146 kb on + strand, within GFF4396 at 200.146 kb on + strand, within GFF4396 at 200.147 kb on - strand, within GFF4396 at 200.147 kb on - strand, within GFF4396 at 200.218 kb on + strand, within GFF4396 at 200.219 kb on - strand, within GFF4396 at 200.219 kb on - strand, within GFF4396 at 200.372 kb on - strand at 200.372 kb on - strand at 200.656 kb on - strand at 200.699 kb on + strand at 200.699 kb on + strand at 200.700 kb on - strand at 200.951 kb on + strand, within GFF4397 at 200.951 kb on + strand, within GFF4397 at 200.951 kb on + strand, within GFF4397 at 200.951 kb on + strand, within GFF4397 at 200.952 kb on - strand, within GFF4397 at 200.952 kb on - strand, within GFF4397 at 200.952 kb on - strand, within GFF4397
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 198,903 + -0.9 198,920 + -0.3 198,920 + +0.8 198,966 + +0.8 199,059 - +1.3 199,102 + -0.3 199,102 + -1.3 199,102 + -0.2 199,103 - +0.3 199,456 + GFF4396 0.21 -0.2 199,457 - GFF4396 0.21 -0.6 199,537 + GFF4396 0.27 +0.7 199,537 + GFF4396 0.27 +1.3 199,538 - GFF4396 0.27 -0.2 199,597 + GFF4396 0.32 -0.7 199,630 + GFF4396 0.34 +1.6 199,630 + GFF4396 0.34 -1.7 199,631 - GFF4396 0.34 +0.7 199,682 - GFF4396 0.38 +0.0 199,682 - GFF4396 0.38 +0.1 199,762 + GFF4396 0.44 +0.9 199,763 - GFF4396 0.44 -2.3 199,819 + GFF4396 0.48 +0.7 199,820 - GFF4396 0.48 -0.3 200,146 + GFF4396 0.73 +0.1 200,146 + GFF4396 0.73 -0.4 200,147 - GFF4396 0.73 -0.3 200,147 - GFF4396 0.73 +1.5 200,218 + GFF4396 0.79 -0.3 200,219 - GFF4396 0.79 +0.8 200,219 - GFF4396 0.79 -0.9 200,372 - +0.3 200,372 - -0.3 200,656 - -0.5 200,699 + -0.0 200,699 + +1.0 200,700 - -1.0 200,951 + GFF4397 0.33 -1.1 200,951 + GFF4397 0.33 +0.1 200,951 + GFF4397 0.33 -1.3 200,951 + GFF4397 0.33 -0.2 200,952 - GFF4397 0.33 -1.5 200,952 - GFF4397 0.33 +1.8 200,952 - GFF4397 0.33 -0.4
Or see this region's nucleotide sequence