Strain Fitness in Xanthobacter sp. DMC5 around GFF4377

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4375 and GFF4376 are separated by 24 nucleotidesGFF4376 and GFF4377 are separated by 26 nucleotidesGFF4377 and GFF4378 are separated by 21 nucleotidesGFF4378 and GFF4379 are separated by 147 nucleotides GFF4375 - 2-amino-5-chloromuconic acid deaminase, at 165,021 to 166,367 GFF4375 GFF4376 - hypothetical protein, at 166,392 to 166,772 GFF4376 GFF4377 - Anthranilate 3-monooxygenase oxygenase component, at 166,799 to 168,283 GFF4377 GFF4378 - p-hydroxyphenylacetate 3-hydroxylase, reductase component, at 168,305 to 168,817 GFF4378 GFF4379 - hypothetical protein, at 168,965 to 169,555 GFF4379 Position (kb) 166 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.436 kb on + strand, within GFF4376at 166.484 kb on - strand, within GFF4376at 166.484 kb on - strand, within GFF4376at 166.700 kb on - strand, within GFF4376at 166.700 kb on - strand, within GFF4376at 166.739 kb on + strandat 166.849 kb on - strandat 166.849 kb on - strandat 166.896 kb on + strandat 166.896 kb on + strandat 166.896 kb on + strandat 166.896 kb on + strandat 166.897 kb on - strandat 166.897 kb on - strandat 166.897 kb on - strandat 166.897 kb on - strandat 166.897 kb on - strandat 166.941 kb on + strandat 166.941 kb on + strandat 166.942 kb on - strandat 166.942 kb on - strandat 166.954 kb on - strand, within GFF4377at 167.007 kb on + strand, within GFF4377at 167.007 kb on + strand, within GFF4377at 167.008 kb on - strand, within GFF4377at 167.088 kb on + strand, within GFF4377at 167.089 kb on - strand, within GFF4377at 167.164 kb on - strand, within GFF4377at 167.193 kb on + strand, within GFF4377at 167.193 kb on + strand, within GFF4377at 167.221 kb on - strand, within GFF4377at 167.221 kb on - strand, within GFF4377at 167.229 kb on + strand, within GFF4377at 167.229 kb on + strand, within GFF4377at 167.230 kb on - strand, within GFF4377at 167.230 kb on - strand, within GFF4377at 167.232 kb on + strand, within GFF4377at 167.232 kb on + strand, within GFF4377at 167.233 kb on - strand, within GFF4377at 167.233 kb on - strand, within GFF4377at 167.409 kb on + strand, within GFF4377at 167.409 kb on + strand, within GFF4377at 167.409 kb on + strand, within GFF4377at 167.410 kb on - strand, within GFF4377at 167.418 kb on + strand, within GFF4377at 167.419 kb on - strand, within GFF4377at 167.480 kb on + strand, within GFF4377at 167.480 kb on + strand, within GFF4377at 167.480 kb on + strand, within GFF4377at 167.481 kb on - strand, within GFF4377at 167.514 kb on + strand, within GFF4377at 167.515 kb on - strand, within GFF4377at 167.586 kb on + strand, within GFF4377at 167.586 kb on + strand, within GFF4377at 167.586 kb on + strand, within GFF4377at 167.587 kb on - strand, within GFF4377at 167.587 kb on - strand, within GFF4377at 167.587 kb on - strand, within GFF4377at 167.587 kb on - strand, within GFF4377at 167.847 kb on + strand, within GFF4377at 167.848 kb on - strand, within GFF4377at 167.848 kb on - strand, within GFF4377at 167.848 kb on - strand, within GFF4377at 167.848 kb on - strand, within GFF4377at 167.856 kb on + strand, within GFF4377at 167.857 kb on - strand, within GFF4377at 167.883 kb on + strand, within GFF4377at 167.886 kb on + strand, within GFF4377at 167.886 kb on + strand, within GFF4377at 167.887 kb on - strand, within GFF4377at 167.944 kb on + strand, within GFF4377at 167.944 kb on + strand, within GFF4377at 167.944 kb on + strand, within GFF4377at 167.944 kb on + strand, within GFF4377at 167.945 kb on - strand, within GFF4377at 167.945 kb on - strand, within GFF4377at 167.945 kb on - strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 168.054 kb on + strand, within GFF4377at 168.055 kb on - strand, within GFF4377at 168.055 kb on - strand, within GFF4377at 168.055 kb on - strand, within GFF4377at 168.259 kb on + strandat 168.259 kb on + strandat 168.260 kb on - strandat 168.260 kb on - strandat 168.260 kb on - strandat 168.301 kb on - strandat 168.334 kb on - strandat 168.334 kb on - strandat 169.033 kb on + strand, within GFF4379

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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166,436 + GFF4376 0.12 -0.4
166,484 - GFF4376 0.24 +1.7
166,484 - GFF4376 0.24 +1.3
166,700 - GFF4376 0.81 +1.1
166,700 - GFF4376 0.81 -1.1
166,739 + +0.0
166,849 - -0.4
166,849 - -1.6
166,896 + -0.1
166,896 + +0.5
166,896 + -0.3
166,896 + -0.7
166,897 - -0.3
166,897 - +1.3
166,897 - +0.3
166,897 - -1.4
166,897 - +0.6
166,941 + -0.4
166,941 + +1.7
166,942 - +1.4
166,942 - +1.5
166,954 - GFF4377 0.10 +1.5
167,007 + GFF4377 0.14 -1.7
167,007 + GFF4377 0.14 -0.7
167,008 - GFF4377 0.14 +0.2
167,088 + GFF4377 0.19 +0.6
167,089 - GFF4377 0.20 -0.1
167,164 - GFF4377 0.25 +0.4
167,193 + GFF4377 0.27 +0.7
167,193 + GFF4377 0.27 +0.8
167,221 - GFF4377 0.28 -0.7
167,221 - GFF4377 0.28 +0.8
167,229 + GFF4377 0.29 -0.7
167,229 + GFF4377 0.29 -0.6
167,230 - GFF4377 0.29 +0.3
167,230 - GFF4377 0.29 +0.5
167,232 + GFF4377 0.29 +0.7
167,232 + GFF4377 0.29 +0.1
167,233 - GFF4377 0.29 +1.5
167,233 - GFF4377 0.29 -0.5
167,409 + GFF4377 0.41 -0.4
167,409 + GFF4377 0.41 -0.4
167,409 + GFF4377 0.41 -0.0
167,410 - GFF4377 0.41 -0.4
167,418 + GFF4377 0.42 -0.6
167,419 - GFF4377 0.42 -0.1
167,480 + GFF4377 0.46 +0.0
167,480 + GFF4377 0.46 -1.3
167,480 + GFF4377 0.46 +0.6
167,481 - GFF4377 0.46 -0.2
167,514 + GFF4377 0.48 +0.6
167,515 - GFF4377 0.48 +1.0
167,586 + GFF4377 0.53 -0.4
167,586 + GFF4377 0.53 -0.2
167,586 + GFF4377 0.53 +0.5
167,587 - GFF4377 0.53 +0.1
167,587 - GFF4377 0.53 -2.1
167,587 - GFF4377 0.53 +0.2
167,587 - GFF4377 0.53 +0.6
167,847 + GFF4377 0.71 -1.1
167,848 - GFF4377 0.71 +0.1
167,848 - GFF4377 0.71 +0.1
167,848 - GFF4377 0.71 +0.4
167,848 - GFF4377 0.71 +0.6
167,856 + GFF4377 0.71 +0.3
167,857 - GFF4377 0.71 +1.3
167,883 + GFF4377 0.73 -0.4
167,886 + GFF4377 0.73 -0.9
167,886 + GFF4377 0.73 -0.0
167,887 - GFF4377 0.73 -0.0
167,944 + GFF4377 0.77 +0.4
167,944 + GFF4377 0.77 -0.0
167,944 + GFF4377 0.77 +0.3
167,944 + GFF4377 0.77 +1.4
167,945 - GFF4377 0.77 -0.8
167,945 - GFF4377 0.77 -0.3
167,945 - GFF4377 0.77 -0.3
167,946 + GFF4377 0.77 -0.4
167,946 + GFF4377 0.77 +0.6
167,946 + GFF4377 0.77 -3.0
167,946 + GFF4377 0.77 +1.1
167,946 + GFF4377 0.77 -0.2
167,946 + GFF4377 0.77 -0.5
167,946 + GFF4377 0.77 +0.2
167,946 + GFF4377 0.77 +0.6
167,946 + GFF4377 0.77 +0.1
167,946 + GFF4377 0.77 +2.0
167,947 - GFF4377 0.77 -0.0
167,947 - GFF4377 0.77 +0.4
167,947 - GFF4377 0.77 -0.0
167,947 - GFF4377 0.77 +0.2
167,947 - GFF4377 0.77 +1.1
167,947 - GFF4377 0.77 -1.0
167,947 - GFF4377 0.77 -0.9
167,947 - GFF4377 0.77 -0.1
167,947 - GFF4377 0.77 -0.1
168,054 + GFF4377 0.85 -0.0
168,055 - GFF4377 0.85 +0.7
168,055 - GFF4377 0.85 -0.3
168,055 - GFF4377 0.85 +0.7
168,259 + -1.5
168,259 + -0.4
168,260 - +0.2
168,260 - +0.4
168,260 - +0.4
168,301 - +0.8
168,334 - +0.9
168,334 - +1.3
169,033 + GFF4379 0.12 -0.3

Or see this region's nucleotide sequence