Strain Fitness in Xanthobacter sp. DMC5 around GFF4376

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4375 and GFF4376 are separated by 24 nucleotidesGFF4376 and GFF4377 are separated by 26 nucleotides GFF4375 - 2-amino-5-chloromuconic acid deaminase, at 165,021 to 166,367 GFF4375 GFF4376 - hypothetical protein, at 166,392 to 166,772 GFF4376 GFF4377 - Anthranilate 3-monooxygenase oxygenase component, at 166,799 to 168,283 GFF4377 Position (kb) 166 167Strain fitness (log2 ratio) -2 -1 0 1at 165.445 kb on + strand, within GFF4375at 165.445 kb on + strand, within GFF4375at 165.446 kb on - strand, within GFF4375at 165.795 kb on + strand, within GFF4375at 165.796 kb on - strand, within GFF4375at 165.796 kb on - strand, within GFF4375at 166.436 kb on + strand, within GFF4376at 166.484 kb on - strand, within GFF4376at 166.484 kb on - strand, within GFF4376at 166.700 kb on - strand, within GFF4376at 166.700 kb on - strand, within GFF4376at 166.739 kb on + strandat 166.849 kb on - strandat 166.849 kb on - strandat 166.896 kb on + strandat 166.896 kb on + strandat 166.896 kb on + strandat 166.896 kb on + strandat 166.897 kb on - strandat 166.897 kb on - strandat 166.897 kb on - strandat 166.897 kb on - strandat 166.897 kb on - strandat 166.941 kb on + strandat 166.941 kb on + strandat 166.942 kb on - strandat 166.942 kb on - strandat 166.954 kb on - strand, within GFF4377at 167.007 kb on + strand, within GFF4377at 167.007 kb on + strand, within GFF4377at 167.008 kb on - strand, within GFF4377at 167.088 kb on + strand, within GFF4377at 167.089 kb on - strand, within GFF4377at 167.164 kb on - strand, within GFF4377at 167.193 kb on + strand, within GFF4377at 167.193 kb on + strand, within GFF4377at 167.221 kb on - strand, within GFF4377at 167.221 kb on - strand, within GFF4377at 167.229 kb on + strand, within GFF4377at 167.229 kb on + strand, within GFF4377at 167.230 kb on - strand, within GFF4377at 167.230 kb on - strand, within GFF4377at 167.232 kb on + strand, within GFF4377at 167.232 kb on + strand, within GFF4377at 167.233 kb on - strand, within GFF4377at 167.233 kb on - strand, within GFF4377at 167.409 kb on + strand, within GFF4377at 167.409 kb on + strand, within GFF4377at 167.409 kb on + strand, within GFF4377at 167.410 kb on - strand, within GFF4377at 167.418 kb on + strand, within GFF4377at 167.419 kb on - strand, within GFF4377at 167.480 kb on + strand, within GFF4377at 167.480 kb on + strand, within GFF4377at 167.480 kb on + strand, within GFF4377at 167.481 kb on - strand, within GFF4377at 167.514 kb on + strand, within GFF4377at 167.515 kb on - strand, within GFF4377at 167.586 kb on + strand, within GFF4377at 167.586 kb on + strand, within GFF4377at 167.586 kb on + strand, within GFF4377at 167.587 kb on - strand, within GFF4377at 167.587 kb on - strand, within GFF4377at 167.587 kb on - strand, within GFF4377at 167.587 kb on - strand, within GFF4377

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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165,445 + GFF4375 0.31 -0.6
165,445 + GFF4375 0.31 -0.3
165,446 - GFF4375 0.32 -1.2
165,795 + GFF4375 0.57 +0.5
165,796 - GFF4375 0.58 -0.4
165,796 - GFF4375 0.58 -0.9
166,436 + GFF4376 0.12 -0.4
166,484 - GFF4376 0.24 +1.7
166,484 - GFF4376 0.24 +1.3
166,700 - GFF4376 0.81 +1.1
166,700 - GFF4376 0.81 -1.1
166,739 + +0.0
166,849 - -0.4
166,849 - -1.6
166,896 + -0.1
166,896 + +0.5
166,896 + -0.3
166,896 + -0.7
166,897 - -0.3
166,897 - +1.3
166,897 - +0.3
166,897 - -1.4
166,897 - +0.6
166,941 + -0.4
166,941 + +1.7
166,942 - +1.4
166,942 - +1.5
166,954 - GFF4377 0.10 +1.5
167,007 + GFF4377 0.14 -1.7
167,007 + GFF4377 0.14 -0.7
167,008 - GFF4377 0.14 +0.2
167,088 + GFF4377 0.19 +0.6
167,089 - GFF4377 0.20 -0.1
167,164 - GFF4377 0.25 +0.4
167,193 + GFF4377 0.27 +0.7
167,193 + GFF4377 0.27 +0.8
167,221 - GFF4377 0.28 -0.7
167,221 - GFF4377 0.28 +0.8
167,229 + GFF4377 0.29 -0.7
167,229 + GFF4377 0.29 -0.6
167,230 - GFF4377 0.29 +0.3
167,230 - GFF4377 0.29 +0.5
167,232 + GFF4377 0.29 +0.7
167,232 + GFF4377 0.29 +0.1
167,233 - GFF4377 0.29 +1.5
167,233 - GFF4377 0.29 -0.5
167,409 + GFF4377 0.41 -0.4
167,409 + GFF4377 0.41 -0.4
167,409 + GFF4377 0.41 -0.0
167,410 - GFF4377 0.41 -0.4
167,418 + GFF4377 0.42 -0.6
167,419 - GFF4377 0.42 -0.1
167,480 + GFF4377 0.46 +0.0
167,480 + GFF4377 0.46 -1.3
167,480 + GFF4377 0.46 +0.6
167,481 - GFF4377 0.46 -0.2
167,514 + GFF4377 0.48 +0.6
167,515 - GFF4377 0.48 +1.0
167,586 + GFF4377 0.53 -0.4
167,586 + GFF4377 0.53 -0.2
167,586 + GFF4377 0.53 +0.5
167,587 - GFF4377 0.53 +0.1
167,587 - GFF4377 0.53 -2.1
167,587 - GFF4377 0.53 +0.2
167,587 - GFF4377 0.53 +0.6

Or see this region's nucleotide sequence