Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4371 and GFF4372 are separated by 115 nucleotides GFF4372 and GFF4373 are separated by 188 nucleotides GFF4373 and GFF4374 overlap by 17 nucleotides
GFF4371 - hypothetical protein, at 161,447 to 162,286
GFF4371
GFF4372 - hypothetical protein, at 162,402 to 162,728
GFF4372
GFF4373 - Transcriptional regulatory protein OmpR, at 162,917 to 163,633
GFF4373
GFF4374 - Adaptive-response sensory-kinase SasA, at 163,617 to 165,011
GFF4374
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 161.985 kb on + strand, within GFF4371 at 161.985 kb on + strand, within GFF4371 at 161.985 kb on + strand, within GFF4371 at 161.986 kb on - strand, within GFF4371 at 161.988 kb on + strand, within GFF4371 at 161.989 kb on - strand, within GFF4371 at 161.989 kb on - strand, within GFF4371 at 162.168 kb on + strand, within GFF4371 at 162.168 kb on + strand, within GFF4371 at 162.168 kb on + strand, within GFF4371 at 162.168 kb on + strand, within GFF4371 at 162.169 kb on - strand, within GFF4371 at 162.184 kb on + strand, within GFF4371 at 162.185 kb on - strand, within GFF4371 at 162.185 kb on - strand, within GFF4371 at 162.185 kb on - strand, within GFF4371 at 162.201 kb on + strand, within GFF4371 at 162.396 kb on - strand at 162.469 kb on + strand, within GFF4372 at 162.475 kb on + strand, within GFF4372 at 162.475 kb on + strand, within GFF4372 at 162.475 kb on + strand, within GFF4372 at 162.476 kb on - strand, within GFF4372 at 162.476 kb on - strand, within GFF4372 at 162.476 kb on - strand, within GFF4372 at 162.830 kb on - strand at 162.998 kb on + strand, within GFF4373 at 162.999 kb on - strand, within GFF4373 at 162.999 kb on - strand, within GFF4373 at 162.999 kb on - strand, within GFF4373 at 163.602 kb on - strand at 163.883 kb on - strand, within GFF4374 at 164.094 kb on + strand, within GFF4374 at 164.094 kb on + strand, within GFF4374 at 164.105 kb on - strand, within GFF4374 at 164.310 kb on - strand, within GFF4374 at 164.413 kb on - strand, within GFF4374 at 164.413 kb on - strand, within GFF4374 at 164.413 kb on - strand, within GFF4374
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 161,985 + GFF4371 0.64 -0.4 161,985 + GFF4371 0.64 +0.3 161,985 + GFF4371 0.64 +0.6 161,986 - GFF4371 0.64 -0.1 161,988 + GFF4371 0.64 -1.0 161,989 - GFF4371 0.65 -0.6 161,989 - GFF4371 0.65 +0.3 162,168 + GFF4371 0.86 -0.2 162,168 + GFF4371 0.86 -0.2 162,168 + GFF4371 0.86 -0.5 162,168 + GFF4371 0.86 -0.4 162,169 - GFF4371 0.86 +0.4 162,184 + GFF4371 0.88 -1.1 162,185 - GFF4371 0.88 +3.0 162,185 - GFF4371 0.88 +0.1 162,185 - GFF4371 0.88 -0.5 162,201 + GFF4371 0.90 +0.0 162,396 - -1.0 162,469 + GFF4372 0.20 +1.5 162,475 + GFF4372 0.22 +0.6 162,475 + GFF4372 0.22 -0.2 162,475 + GFF4372 0.22 +1.1 162,476 - GFF4372 0.23 +0.4 162,476 - GFF4372 0.23 -1.9 162,476 - GFF4372 0.23 -0.1 162,830 - -0.6 162,998 + GFF4373 0.11 -0.1 162,999 - GFF4373 0.11 -0.6 162,999 - GFF4373 0.11 -0.3 162,999 - GFF4373 0.11 +1.1 163,602 - +0.7 163,883 - GFF4374 0.19 +0.2 164,094 + GFF4374 0.34 -1.3 164,094 + GFF4374 0.34 -0.5 164,105 - GFF4374 0.35 +0.3 164,310 - GFF4374 0.50 +0.3 164,413 - GFF4374 0.57 -0.4 164,413 - GFF4374 0.57 +0.8 164,413 - GFF4374 0.57 -0.0
Or see this region's nucleotide sequence