Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4367 and GFF4368 are separated by 2 nucleotides GFF4368 and GFF4369 are separated by 334 nucleotides GFF4369 and GFF4370 are separated by 68 nucleotides GFF4370 and GFF4371 are separated by 153 nucleotides
GFF4367 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 154,935 to 156,251
GFF4367
GFF4368 - hypothetical protein, at 156,254 to 156,802
GFF4368
GFF4369 - hypothetical protein, at 157,137 to 160,850
GFF4369
GFF4370 - hypothetical protein, at 160,919 to 161,293
GFF4370
GFF4371 - hypothetical protein, at 161,447 to 162,286
GFF4371
Position (kb) 157
158
159
160
161 Strain fitness (log2 ratio) -2
-1
0
1 at 156.321 kb on + strand, within GFF4368 at 156.321 kb on + strand, within GFF4368 at 156.400 kb on - strand, within GFF4368 at 156.606 kb on + strand, within GFF4368 at 156.774 kb on + strand at 156.774 kb on + strand at 156.775 kb on - strand at 156.775 kb on - strand at 157.335 kb on + strand at 157.857 kb on + strand, within GFF4369 at 157.857 kb on + strand, within GFF4369 at 157.858 kb on - strand, within GFF4369 at 157.858 kb on - strand, within GFF4369 at 157.881 kb on + strand, within GFF4369 at 157.881 kb on + strand, within GFF4369 at 158.133 kb on + strand, within GFF4369 at 158.134 kb on - strand, within GFF4369 at 158.244 kb on + strand, within GFF4369 at 158.244 kb on + strand, within GFF4369 at 158.373 kb on + strand, within GFF4369 at 158.373 kb on + strand, within GFF4369 at 158.374 kb on - strand, within GFF4369 at 158.563 kb on - strand, within GFF4369 at 158.578 kb on - strand, within GFF4369 at 158.689 kb on - strand, within GFF4369 at 158.874 kb on + strand, within GFF4369 at 158.874 kb on + strand, within GFF4369 at 158.875 kb on - strand, within GFF4369 at 159.576 kb on + strand, within GFF4369 at 159.729 kb on - strand, within GFF4369 at 159.747 kb on + strand, within GFF4369 at 159.748 kb on - strand, within GFF4369 at 159.750 kb on - strand, within GFF4369 at 159.750 kb on - strand, within GFF4369 at 159.948 kb on + strand, within GFF4369 at 159.949 kb on - strand, within GFF4369 at 159.950 kb on + strand, within GFF4369 at 159.951 kb on - strand, within GFF4369 at 159.951 kb on - strand, within GFF4369 at 160.026 kb on + strand, within GFF4369 at 160.173 kb on + strand, within GFF4369 at 160.173 kb on + strand, within GFF4369 at 160.173 kb on + strand, within GFF4369 at 160.174 kb on - strand, within GFF4369 at 160.174 kb on - strand, within GFF4369 at 160.174 kb on - strand, within GFF4369 at 160.174 kb on - strand, within GFF4369 at 160.239 kb on - strand, within GFF4369 at 160.405 kb on - strand, within GFF4369 at 160.405 kb on - strand, within GFF4369 at 160.410 kb on + strand, within GFF4369 at 160.411 kb on - strand, within GFF4369 at 160.414 kb on - strand, within GFF4369 at 160.606 kb on - strand at 160.822 kb on - strand at 160.975 kb on + strand, within GFF4370 at 160.975 kb on + strand, within GFF4370 at 160.975 kb on + strand, within GFF4370 at 160.976 kb on - strand, within GFF4370 at 161.132 kb on - strand, within GFF4370 at 161.146 kb on - strand, within GFF4370 at 161.346 kb on - strand at 161.346 kb on - strand at 161.433 kb on - strand at 161.515 kb on - strand at 161.515 kb on - strand at 161.531 kb on - strand, within GFF4371 at 161.778 kb on + strand, within GFF4371 at 161.848 kb on - strand, within GFF4371
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 156,321 + GFF4368 0.12 +0.5 156,321 + GFF4368 0.12 -1.1 156,400 - GFF4368 0.27 +0.8 156,606 + GFF4368 0.64 +0.4 156,774 + +0.0 156,774 + -0.5 156,775 - +0.8 156,775 - +0.3 157,335 + -0.7 157,857 + GFF4369 0.19 -0.8 157,857 + GFF4369 0.19 -0.6 157,858 - GFF4369 0.19 -0.7 157,858 - GFF4369 0.19 -0.4 157,881 + GFF4369 0.20 -0.8 157,881 + GFF4369 0.20 -1.2 158,133 + GFF4369 0.27 +0.2 158,134 - GFF4369 0.27 -0.7 158,244 + GFF4369 0.30 -0.3 158,244 + GFF4369 0.30 +0.1 158,373 + GFF4369 0.33 -1.0 158,373 + GFF4369 0.33 -0.9 158,374 - GFF4369 0.33 -0.4 158,563 - GFF4369 0.38 -0.0 158,578 - GFF4369 0.39 -1.9 158,689 - GFF4369 0.42 -0.6 158,874 + GFF4369 0.47 -0.1 158,874 + GFF4369 0.47 +0.3 158,875 - GFF4369 0.47 -1.6 159,576 + GFF4369 0.66 -1.2 159,729 - GFF4369 0.70 -1.8 159,747 + GFF4369 0.70 -0.5 159,748 - GFF4369 0.70 +0.0 159,750 - GFF4369 0.70 -0.5 159,750 - GFF4369 0.70 -0.2 159,948 + GFF4369 0.76 -0.1 159,949 - GFF4369 0.76 +0.8 159,950 + GFF4369 0.76 -0.9 159,951 - GFF4369 0.76 -0.8 159,951 - GFF4369 0.76 +0.3 160,026 + GFF4369 0.78 -0.8 160,173 + GFF4369 0.82 -0.4 160,173 + GFF4369 0.82 -0.9 160,173 + GFF4369 0.82 -0.7 160,174 - GFF4369 0.82 +0.2 160,174 - GFF4369 0.82 -1.2 160,174 - GFF4369 0.82 -0.2 160,174 - GFF4369 0.82 -0.9 160,239 - GFF4369 0.84 +0.9 160,405 - GFF4369 0.88 -0.2 160,405 - GFF4369 0.88 -0.0 160,410 + GFF4369 0.88 +0.7 160,411 - GFF4369 0.88 -1.7 160,414 - GFF4369 0.88 +1.1 160,606 - -1.6 160,822 - +0.2 160,975 + GFF4370 0.15 +0.6 160,975 + GFF4370 0.15 -1.1 160,975 + GFF4370 0.15 -0.8 160,976 - GFF4370 0.15 -1.2 161,132 - GFF4370 0.57 +1.0 161,146 - GFF4370 0.61 -0.1 161,346 - +1.0 161,346 - -0.2 161,433 - -0.1 161,515 - +0.6 161,515 - -1.8 161,531 - GFF4371 0.10 -1.1 161,778 + GFF4371 0.39 -0.7 161,848 - GFF4371 0.48 -0.4
Or see this region's nucleotide sequence