Strain Fitness in Xanthobacter sp. DMC5 around GFF430

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF429 and GFF430 are separated by 222 nucleotidesGFF430 and GFF431 are separated by 3 nucleotides GFF429 - Sialic acid-binding periplasmic protein SiaP, at 452,135 to 453,124 GFF429 GFF430 - hypothetical protein, at 453,347 to 453,928 GFF430 GFF431 - Sialic acid TRAP transporter large permease protein SiaM, at 453,932 to 455,338 GFF431 Position (kb) 453 454Strain fitness (log2 ratio) -2 -1 0 1 2at 452.432 kb on + strand, within GFF429at 452.432 kb on + strand, within GFF429at 452.453 kb on + strand, within GFF429at 452.453 kb on + strand, within GFF429at 452.454 kb on - strand, within GFF429at 452.454 kb on - strand, within GFF429at 452.454 kb on - strand, within GFF429at 452.456 kb on + strand, within GFF429at 452.462 kb on + strand, within GFF429at 452.573 kb on + strand, within GFF429at 452.574 kb on - strand, within GFF429at 452.576 kb on + strand, within GFF429at 452.666 kb on + strand, within GFF429at 452.666 kb on + strand, within GFF429at 452.667 kb on - strand, within GFF429at 452.667 kb on - strand, within GFF429at 452.667 kb on - strand, within GFF429at 452.667 kb on - strand, within GFF429at 452.726 kb on + strand, within GFF429at 452.727 kb on - strand, within GFF429at 452.727 kb on - strand, within GFF429at 452.727 kb on - strand, within GFF429at 452.727 kb on - strand, within GFF429at 453.168 kb on + strandat 453.168 kb on + strandat 453.169 kb on - strandat 453.169 kb on - strandat 453.169 kb on - strandat 453.394 kb on + strandat 453.394 kb on + strandat 453.395 kb on - strandat 453.395 kb on - strandat 453.395 kb on - strandat 453.554 kb on + strand, within GFF430at 453.554 kb on + strand, within GFF430at 453.554 kb on + strand, within GFF430at 453.554 kb on + strand, within GFF430at 453.555 kb on - strand, within GFF430at 453.555 kb on - strand, within GFF430at 453.555 kb on - strand, within GFF430at 453.555 kb on - strand, within GFF430at 453.621 kb on + strand, within GFF430at 453.622 kb on - strand, within GFF430at 453.622 kb on - strand, within GFF430at 453.622 kb on - strand, within GFF430at 453.707 kb on + strand, within GFF430at 453.794 kb on + strand, within GFF430at 453.795 kb on - strand, within GFF430at 453.908 kb on + strandat 453.908 kb on + strandat 454.017 kb on - strandat 454.160 kb on + strand, within GFF431at 454.316 kb on + strand, within GFF431at 454.317 kb on - strand, within GFF431at 454.424 kb on + strand, within GFF431at 454.682 kb on + strand, within GFF431at 454.682 kb on + strand, within GFF431

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
452,432 + GFF429 0.30 -0.5
452,432 + GFF429 0.30 -0.4
452,453 + GFF429 0.32 +0.3
452,453 + GFF429 0.32 +0.3
452,454 - GFF429 0.32 -0.4
452,454 - GFF429 0.32 -1.2
452,454 - GFF429 0.32 -0.0
452,456 + GFF429 0.32 -0.4
452,462 + GFF429 0.33 -0.1
452,573 + GFF429 0.44 -2.6
452,574 - GFF429 0.44 +0.6
452,576 + GFF429 0.45 -0.8
452,666 + GFF429 0.54 +1.1
452,666 + GFF429 0.54 -0.1
452,667 - GFF429 0.54 +0.3
452,667 - GFF429 0.54 +0.5
452,667 - GFF429 0.54 +0.4
452,667 - GFF429 0.54 -0.2
452,726 + GFF429 0.60 -1.8
452,727 - GFF429 0.60 +1.0
452,727 - GFF429 0.60 -1.0
452,727 - GFF429 0.60 -0.8
452,727 - GFF429 0.60 -0.2
453,168 + -0.0
453,168 + -0.0
453,169 - +0.2
453,169 - -0.2
453,169 - +0.1
453,394 + +1.0
453,394 + +1.1
453,395 - +0.1
453,395 - +0.6
453,395 - -0.1
453,554 + GFF430 0.36 -0.6
453,554 + GFF430 0.36 +0.4
453,554 + GFF430 0.36 +2.0
453,554 + GFF430 0.36 -0.7
453,555 - GFF430 0.36 -0.0
453,555 - GFF430 0.36 -0.1
453,555 - GFF430 0.36 +0.1
453,555 - GFF430 0.36 -0.3
453,621 + GFF430 0.47 -0.2
453,622 - GFF430 0.47 -0.5
453,622 - GFF430 0.47 +1.1
453,622 - GFF430 0.47 -1.5
453,707 + GFF430 0.62 -0.5
453,794 + GFF430 0.77 +0.8
453,795 - GFF430 0.77 +0.7
453,908 + -1.0
453,908 + +0.6
454,017 - -0.4
454,160 + GFF431 0.16 +0.3
454,316 + GFF431 0.27 -1.0
454,317 - GFF431 0.27 +0.4
454,424 + GFF431 0.35 +0.2
454,682 + GFF431 0.53 +0.5
454,682 + GFF431 0.53 +0.1

Or see this region's nucleotide sequence