Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4297 and GFF4298 overlap by 17 nucleotides GFF4298 and GFF4299 are separated by 154 nucleotides GFF4299 and GFF4300 are separated by 53 nucleotides GFF4300 and GFF4301 are separated by 87 nucleotides
GFF4297 - Linear gramicidin dehydrogenase LgrE, at 77,952 to 78,653
GFF4297
GFF4298 - hypothetical protein, at 78,637 to 79,353
GFF4298
GFF4299 - HTH-type transcriptional repressor RspR, at 79,508 to 80,197
GFF4299
GFF4300 - hypothetical protein, at 80,251 to 80,934
GFF4300
GFF4301 - hypothetical protein, at 81,022 to 82,194
GFF4301
Position (kb) 79
80
81 Strain fitness (log2 ratio) -1
0
1 at 79.282 kb on + strand at 79.352 kb on - strand at 79.668 kb on - strand, within GFF4299 at 79.749 kb on - strand, within GFF4299 at 80.112 kb on + strand, within GFF4299 at 80.112 kb on + strand, within GFF4299 at 80.113 kb on - strand, within GFF4299 at 80.113 kb on - strand, within GFF4299 at 80.113 kb on - strand, within GFF4299 at 80.113 kb on - strand, within GFF4299 at 80.282 kb on + strand at 80.282 kb on + strand at 80.414 kb on + strand, within GFF4300 at 80.415 kb on - strand, within GFF4300 at 80.498 kb on + strand, within GFF4300 at 80.498 kb on + strand, within GFF4300 at 80.498 kb on + strand, within GFF4300 at 80.603 kb on + strand, within GFF4300 at 80.603 kb on + strand, within GFF4300 at 80.604 kb on - strand, within GFF4300 at 80.604 kb on - strand, within GFF4300 at 80.626 kb on - strand, within GFF4300 at 80.676 kb on + strand, within GFF4300 at 80.677 kb on - strand, within GFF4300 at 80.757 kb on - strand, within GFF4300 at 80.759 kb on + strand, within GFF4300 at 80.759 kb on + strand, within GFF4300 at 80.760 kb on - strand, within GFF4300 at 80.760 kb on - strand, within GFF4300 at 80.760 kb on - strand, within GFF4300 at 81.080 kb on + strand at 81.081 kb on - strand at 81.081 kb on - strand at 81.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 79,282 + -0.8 79,352 - +1.3 79,668 - GFF4299 0.23 -1.6 79,749 - GFF4299 0.35 +0.6 80,112 + GFF4299 0.88 -0.3 80,112 + GFF4299 0.88 -0.5 80,113 - GFF4299 0.88 +0.6 80,113 - GFF4299 0.88 -0.3 80,113 - GFF4299 0.88 +1.2 80,113 - GFF4299 0.88 -0.6 80,282 + -0.1 80,282 + +0.0 80,414 + GFF4300 0.24 -1.0 80,415 - GFF4300 0.24 -0.5 80,498 + GFF4300 0.36 -0.9 80,498 + GFF4300 0.36 +1.3 80,498 + GFF4300 0.36 -0.4 80,603 + GFF4300 0.51 +1.0 80,603 + GFF4300 0.51 -1.4 80,604 - GFF4300 0.52 +0.4 80,604 - GFF4300 0.52 -0.7 80,626 - GFF4300 0.55 -0.5 80,676 + GFF4300 0.62 +0.5 80,677 - GFF4300 0.62 -1.3 80,757 - GFF4300 0.74 -0.0 80,759 + GFF4300 0.74 +0.2 80,759 + GFF4300 0.74 +0.3 80,760 - GFF4300 0.74 -1.0 80,760 - GFF4300 0.74 +0.2 80,760 - GFF4300 0.74 -0.2 81,080 + -0.2 81,081 - +0.2 81,081 - +0.1 81,137 + -0.4
Or see this region's nucleotide sequence