Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4238 and GFF4239 are separated by 377 nucleotides GFF4239 and GFF4240 are separated by 90 nucleotides GFF4240 and GFF4241 are separated by 140 nucleotides
GFF4238 - Alkanesulfonate monooxygenase, at 10,161 to 11,330
GFF4238
GFF4239 - hypothetical protein, at 11,708 to 13,072
GFF4239
GFF4240 - hypothetical protein, at 13,163 to 13,477
GFF4240
GFF4241 - Peptide methionine sulfoxide reductase MsrA, at 13,618 to 14,274
GFF4241
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 10.729 kb on + strand, within GFF4238 at 10.729 kb on + strand, within GFF4238 at 10.729 kb on + strand, within GFF4238 at 10.729 kb on + strand, within GFF4238 at 10.729 kb on + strand, within GFF4238 at 10.846 kb on + strand, within GFF4238 at 10.847 kb on - strand, within GFF4238 at 10.850 kb on - strand, within GFF4238 at 10.850 kb on - strand, within GFF4238 at 10.924 kb on + strand, within GFF4238 at 10.924 kb on + strand, within GFF4238 at 10.924 kb on + strand, within GFF4238 at 10.925 kb on - strand, within GFF4238 at 11.261 kb on - strand at 11.581 kb on + strand at 11.582 kb on - strand at 11.848 kb on + strand, within GFF4239 at 12.011 kb on + strand, within GFF4239 at 12.012 kb on - strand, within GFF4239 at 12.039 kb on - strand, within GFF4239 at 12.039 kb on - strand, within GFF4239 at 12.065 kb on + strand, within GFF4239 at 12.066 kb on - strand, within GFF4239 at 12.092 kb on + strand, within GFF4239 at 12.092 kb on + strand, within GFF4239 at 12.093 kb on - strand, within GFF4239 at 12.107 kb on - strand, within GFF4239 at 12.317 kb on + strand, within GFF4239 at 12.317 kb on + strand, within GFF4239 at 12.317 kb on + strand, within GFF4239 at 12.743 kb on + strand, within GFF4239 at 12.962 kb on + strand at 13.086 kb on - strand at 13.116 kb on - strand at 13.516 kb on + strand at 13.520 kb on + strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.564 kb on + strand at 13.564 kb on + strand at 13.565 kb on - strand at 13.708 kb on + strand, within GFF4241 at 13.708 kb on + strand, within GFF4241 at 13.709 kb on - strand, within GFF4241 at 13.841 kb on - strand, within GFF4241 at 13.870 kb on + strand, within GFF4241 at 13.870 kb on + strand, within GFF4241 at 13.871 kb on - strand, within GFF4241 at 13.871 kb on - strand, within GFF4241 at 13.871 kb on - strand, within GFF4241 at 13.871 kb on - strand, within GFF4241 at 13.946 kb on - strand, within GFF4241 at 14.041 kb on + strand, within GFF4241 at 14.041 kb on + strand, within GFF4241 at 14.042 kb on - strand, within GFF4241
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 10,729 + GFF4238 0.49 +1.5 10,729 + GFF4238 0.49 -0.2 10,729 + GFF4238 0.49 -0.4 10,729 + GFF4238 0.49 +1.8 10,729 + GFF4238 0.49 -1.7 10,846 + GFF4238 0.59 +0.8 10,847 - GFF4238 0.59 +0.5 10,850 - GFF4238 0.59 -0.2 10,850 - GFF4238 0.59 +0.0 10,924 + GFF4238 0.65 +0.1 10,924 + GFF4238 0.65 +0.1 10,924 + GFF4238 0.65 +0.4 10,925 - GFF4238 0.65 +0.1 11,261 - -1.8 11,581 + -0.3 11,582 - +0.9 11,848 + GFF4239 0.10 +0.6 12,011 + GFF4239 0.22 -0.6 12,012 - GFF4239 0.22 -0.1 12,039 - GFF4239 0.24 -1.6 12,039 - GFF4239 0.24 +1.0 12,065 + GFF4239 0.26 +0.1 12,066 - GFF4239 0.26 +0.0 12,092 + GFF4239 0.28 -0.4 12,092 + GFF4239 0.28 +0.4 12,093 - GFF4239 0.28 +0.4 12,107 - GFF4239 0.29 +0.0 12,317 + GFF4239 0.45 +0.4 12,317 + GFF4239 0.45 +0.8 12,317 + GFF4239 0.45 -0.9 12,743 + GFF4239 0.76 +0.1 12,962 + -1.2 13,086 - +0.1 13,116 - -0.7 13,516 + +0.1 13,520 + +0.2 13,521 - -0.5 13,521 - +0.5 13,521 - -0.1 13,564 + +0.9 13,564 + +0.6 13,565 - -0.0 13,708 + GFF4241 0.14 -0.7 13,708 + GFF4241 0.14 +0.4 13,709 - GFF4241 0.14 +0.5 13,841 - GFF4241 0.34 -0.6 13,870 + GFF4241 0.38 +0.6 13,870 + GFF4241 0.38 +1.3 13,871 - GFF4241 0.39 -1.2 13,871 - GFF4241 0.39 -0.1 13,871 - GFF4241 0.39 +0.5 13,871 - GFF4241 0.39 -0.3 13,946 - GFF4241 0.50 +0.3 14,041 + GFF4241 0.64 -0.7 14,041 + GFF4241 0.64 +0.6 14,042 - GFF4241 0.65 +0.6
Or see this region's nucleotide sequence