Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4216 and GFF4217 overlap by 1 nucleotides GFF4217 and GFF4218 are separated by 228 nucleotides GFF4218 and GFF4219 overlap by 4 nucleotides GFF4219 and GFF4220 are separated by 38 nucleotides
GFF4216 - 2-halobenzoate 1,2-dioxygenase large subunit, at 245,599 to 246,876
GFF4216
GFF4217 - Anthranilate 1,2-dioxygenase small subunit, at 246,876 to 247,409
GFF4217
GFF4218 - putative enoyl-CoA hydratase echA12, at 247,638 to 248,471
GFF4218
GFF4219 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 248,468 to 249,205
GFF4219
GFF4220 - Ferredoxin-6, at 249,244 to 249,564
GFF4220
Position (kb) 247
248
249 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 246.700 kb on + strand, within GFF4216 at 246.700 kb on + strand, within GFF4216 at 246.700 kb on + strand, within GFF4216 at 246.700 kb on + strand, within GFF4216 at 246.700 kb on + strand, within GFF4216 at 246.701 kb on - strand, within GFF4216 at 246.701 kb on - strand, within GFF4216 at 246.701 kb on - strand, within GFF4216 at 246.847 kb on + strand at 246.848 kb on - strand at 246.973 kb on - strand, within GFF4217 at 247.044 kb on + strand, within GFF4217 at 247.044 kb on + strand, within GFF4217 at 247.044 kb on + strand, within GFF4217 at 247.044 kb on + strand, within GFF4217 at 247.234 kb on + strand, within GFF4217 at 247.234 kb on + strand, within GFF4217 at 247.235 kb on - strand, within GFF4217 at 247.260 kb on + strand, within GFF4217 at 247.308 kb on + strand, within GFF4217 at 247.387 kb on - strand at 247.387 kb on - strand at 247.387 kb on - strand at 247.387 kb on - strand at 247.387 kb on - strand at 247.714 kb on - strand at 247.800 kb on - strand, within GFF4218 at 248.289 kb on + strand, within GFF4218 at 248.289 kb on + strand, within GFF4218 at 248.906 kb on + strand, within GFF4219 at 248.906 kb on + strand, within GFF4219 at 249.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 246,700 + GFF4216 0.86 +1.0 246,700 + GFF4216 0.86 +0.4 246,700 + GFF4216 0.86 +0.8 246,700 + GFF4216 0.86 +0.4 246,700 + GFF4216 0.86 +0.6 246,701 - GFF4216 0.86 -0.4 246,701 - GFF4216 0.86 -3.1 246,701 - GFF4216 0.86 -0.3 246,847 + +0.0 246,848 - -0.1 246,973 - GFF4217 0.18 -0.2 247,044 + GFF4217 0.31 -1.0 247,044 + GFF4217 0.31 +0.5 247,044 + GFF4217 0.31 -0.5 247,044 + GFF4217 0.31 +0.9 247,234 + GFF4217 0.67 -0.5 247,234 + GFF4217 0.67 +0.3 247,235 - GFF4217 0.67 -2.0 247,260 + GFF4217 0.72 -1.2 247,308 + GFF4217 0.81 -0.7 247,387 - +0.6 247,387 - -0.2 247,387 - +0.3 247,387 - +0.3 247,387 - -1.0 247,714 - -0.5 247,800 - GFF4218 0.19 -0.5 248,289 + GFF4218 0.78 -0.2 248,289 + GFF4218 0.78 +0.1 248,906 + GFF4219 0.59 -1.8 248,906 + GFF4219 0.59 -1.3 249,225 - -0.2
Or see this region's nucleotide sequence